BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0440300 Os08g0440300|AK107167
(93 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G10960.1 | chr5:3464581-3465414 FORWARD LENGTH=278 122 3e-29
AT1G80780.3 | chr1:30358517-30359583 FORWARD LENGTH=287 119 3e-28
AT2G32070.1 | chr2:13640829-13641656 REVERSE LENGTH=276 118 8e-28
AT1G15920.2 | chr1:5469962-5470822 FORWARD LENGTH=287 102 5e-23
AT5G22250.1 | chr5:7365605-7366441 REVERSE LENGTH=279 87 2e-18
AT3G44260.1 | chr3:15952213-15953055 REVERSE LENGTH=281 84 1e-17
AT1G06450.1 | chr1:1965924-1967006 FORWARD LENGTH=361 56 3e-09
AT1G61470.1 | chr1:22678185-22679021 FORWARD LENGTH=279 47 3e-06
AT1G27820.1 | chr1:9691628-9692560 FORWARD LENGTH=311 46 3e-06
AT1G27890.1 | chr1:9714136-9715044 REVERSE LENGTH=303 46 3e-06
>AT5G10960.1 | chr5:3464581-3465414 FORWARD LENGTH=278
Length = 277
Score = 122 bits (307), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 57/84 (67%), Positives = 68/84 (80%)
Query: 1 LIRIYFPVLYDIKHLMRFCSNLHGGLSRLGELLDVKRVGTCHQAGSDSLLTLGCYNKIKE 60
L+ +YFP +YDIKHLM FC+ L GGL+RL EL+ V+RVG CHQAGSDSLLTLG + K+KE
Sbjct: 189 LLYVYFPTVYDIKHLMTFCNGLFGGLNRLAELMGVERVGICHQAGSDSLLTLGSFRKLKE 248
Query: 61 VYFKGSTEKHAGVLYGLVIEDGVN 84
YF GSTEK+ GVLYGL +EDG
Sbjct: 249 RYFPGSTEKYTGVLYGLGVEDGTT 272
>AT1G80780.3 | chr1:30358517-30359583 FORWARD LENGTH=287
Length = 286
Score = 119 bits (298), Expect = 3e-28, Method: Composition-based stats.
Identities = 52/84 (61%), Positives = 68/84 (80%)
Query: 1 LIRIYFPVLYDIKHLMRFCSNLHGGLSRLGELLDVKRVGTCHQAGSDSLLTLGCYNKIKE 60
LI +YFP +YDIKHLM+FC++LHGGL++L ELL+V+RVG CHQAGSDSLLT + K+KE
Sbjct: 189 LINVYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLKE 248
Query: 61 VYFKGSTEKHAGVLYGLVIEDGVN 84
+F G K++GVLYGL +E+ N
Sbjct: 249 NFFVGPLHKYSGVLYGLGVENEAN 272
>AT2G32070.1 | chr2:13640829-13641656 REVERSE LENGTH=276
Length = 275
Score = 118 bits (295), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 53/82 (64%), Positives = 70/82 (85%)
Query: 1 LIRIYFPVLYDIKHLMRFCSNLHGGLSRLGELLDVKRVGTCHQAGSDSLLTLGCYNKIKE 60
+I +YFP +YDIKHLM+FC++LHGGL++L ELLDV+RVG CHQAGSDSLLT + K++E
Sbjct: 190 MISVYFPRVYDIKHLMKFCNSLHGGLNKLAELLDVERVGICHQAGSDSLLTSCTFRKLQE 249
Query: 61 VYFKGSTEKHAGVLYGLVIEDG 82
+F GS EK++GVLYGL +E+G
Sbjct: 250 NFFIGSMEKYSGVLYGLGVENG 271
>AT1G15920.2 | chr1:5469962-5470822 FORWARD LENGTH=287
Length = 286
Score = 102 bits (253), Expect = 5e-23, Method: Composition-based stats.
Identities = 46/73 (63%), Positives = 59/73 (80%)
Query: 5 YFPVLYDIKHLMRFCSNLHGGLSRLGELLDVKRVGTCHQAGSDSLLTLGCYNKIKEVYFK 64
+FPV+YDIK+LM FC+NL+GGL ++ ELL VKRVG HQAGSDSLLTL + K+KE +F
Sbjct: 203 FFPVVYDIKYLMGFCTNLYGGLEKIAELLGVKRVGISHQAGSDSLLTLRTFIKMKEFFFT 262
Query: 65 GSTEKHAGVLYGL 77
GS K++G L+GL
Sbjct: 263 GSLLKYSGFLFGL 275
>AT5G22250.1 | chr5:7365605-7366441 REVERSE LENGTH=279
Length = 278
Score = 86.7 bits (213), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 60/83 (72%), Gaps = 4/83 (4%)
Query: 1 LIRIYF-PVLYDIKHLMRFCSN-LHGGLSRLGELLDVKR-VGTCHQAGSDSLLTLGCYNK 57
L+R +F +YD+KH+MRFC L+GGL R+ L+V R VG CHQAGSDSLLT + +
Sbjct: 195 LLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLTWQAFQR 254
Query: 58 IKEVYF-KGSTEKHAGVLYGLVI 79
++++YF + EKHAGVLYGL +
Sbjct: 255 MRDLYFVEDGAEKHAGVLYGLEV 277
>AT3G44260.1 | chr3:15952213-15953055 REVERSE LENGTH=281
Length = 280
Score = 84.0 bits (206), Expect = 1e-17, Method: Composition-based stats.
Identities = 42/83 (50%), Positives = 59/83 (71%), Gaps = 4/83 (4%)
Query: 1 LIRIYF-PVLYDIKHLMRFCSN-LHGGLSRLGELLDVKR-VGTCHQAGSDSLLTLGCYNK 57
++R+ F +YD+KH+M+FC L GGL R+ L+V R VG CHQAGSDSLLT + +
Sbjct: 197 VMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLLTWHAFQR 256
Query: 58 IKEVYF-KGSTEKHAGVLYGLVI 79
++++YF + EKHAGVLYGL +
Sbjct: 257 MRDLYFVQDGPEKHAGVLYGLEV 279
>AT1G06450.1 | chr1:1965924-1967006 FORWARD LENGTH=361
Length = 360
Score = 56.2 bits (134), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 6 FPVLYDIKHLMRFCSNL--HGGLSRLGELLDVKRVGTCHQAGSDSLLTLGCYNKIKEVYF 63
F +YD K + FC L H GLS+L +LL + RVG H AGSDSL+T + K+K VY
Sbjct: 183 FGQVYDTKVMAGFCEGLGEHLGLSKLAQLLQITRVGRAHHAGSDSLMTALVFIKLKHVYE 242
Query: 64 KGSTEKHAGVLYGL 77
+ G++YG+
Sbjct: 243 DSRFAR--GLIYGI 254
>AT1G61470.1 | chr1:22678185-22679021 FORWARD LENGTH=279
Length = 278
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 9 LYDIKHLMRFCSNLHG--GLSRLGELLDVKRVGTCHQAGSDSLLTLGCYNKI 58
+YD+K + CS L GL R+ ++L ++RVG H AGSDS LT + K+
Sbjct: 177 VYDVKKMAGLCSGLSSRFGLQRIADVLQMRRVGKAHHAGSDSELTARVFTKL 228
>AT1G27820.1 | chr1:9691628-9692560 FORWARD LENGTH=311
Length = 310
Score = 46.2 bits (108), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 9 LYDIKHLMRFCSNLHG--GLSRLGELLDVKRVGTCHQAGSDSLLTLGCYNKI 58
++D+K + CS L GL R+ ++L +KRVG H AGSDS LT + K+
Sbjct: 183 VFDVKKIAESCSGLSSQFGLQRIADVLQMKRVGKAHHAGSDSELTARVFTKL 234
>AT1G27890.1 | chr1:9714136-9715044 REVERSE LENGTH=303
Length = 302
Score = 46.2 bits (108), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 9 LYDIKHLMRFCSNLHG--GLSRLGELLDVKRVGTCHQAGSDSLLTLGCYNKI 58
++D+K + CS L GL R+ ++L +KRVG H AGSDS LT + K+
Sbjct: 178 VFDVKKIAESCSGLSSRFGLQRIADVLQMKRVGKAHHAGSDSELTARVFTKL 229
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.144 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,271,699
Number of extensions: 81681
Number of successful extensions: 181
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 10
Length of query: 93
Length of database: 11,106,569
Length adjustment: 64
Effective length of query: 29
Effective length of database: 9,351,945
Effective search space: 271206405
Effective search space used: 271206405
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)