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Os04g0684900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ribonuclease CAF1 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.34 (0.0676) R2 : 0.356
β1 : 0.543 (0.251) R2dD : 0.00724 R2D : 0.00734
β2 : 0.268 (0.229) R2dC : 0.00381 R2C : 0.0488
β3 : 3.44 (0.336) R2dE : 0.299 R2E : 0.325
β4 : 3.8 (1) R2dD*C : 0.0477 R2D*C : -0.0237
β5 : -5.47 (1.34) R2dD*E : 0.0558 R2D*E : -0.057
γ1 : 0.141 (0.144) R2dN8 : 0.00185 R2N8 : -0.00444
σ : 1.26
deviance : 718.36
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_____
C
peak time of C : 21.4
E
wheather : radiation
threshold : 8.49
memory length : 762
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 13.8
open length of G : 4.73

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
718.36 1.26 9.34 0.543 0.268 3.44 3.8 -5.47 0.141 21.4 8.49 762 13.8 4.73
743.44 1.27 9.3 0.533 0.356 3.2 1.63 -- 0.106 20 8.67 773 13.8 4.9
740.34 1.27 9.32 0.358 0.333 3.27 -- -1.92 0.123 22.7 8.679 770 13.8 4.73
741.4 1.27 9.35 0.336 0.608 3.14 -- -- 0.0499 18.7 8.775 810 13.8 5.73
742.48 1.27 9.3 0.33 -- 3.6 -- -1.49 0.149 -- 8.729 767 13.8 4.73
842.92 1.36 9.4 0.5 2.05 -- 0.679 -- -0.0862 23.3 -- -- -- --
844.86 1.36 9.4 0.471 2.04 -- -- -- -0.0896 23.4 -- -- -- --
748.13 1.27 9.31 0.307 -- 3.58 -- -- 0.138 -- 8.728 767 13.8 4.75
743.53 1.27 9.35 -- 0.586 3.32 -- -- 0.0154 18.2 8.671 806 13.7 5.87
1106.55 1.55 9.36 0.525 -- -- -- -- -0.0688 -- -- -- -- --
850.71 1.36 9.42 -- 2.05 -- -- -- -0.142 23.4 -- -- -- --
750.57 1.28 9.31 -- -- 3.61 -- -- 0.114 -- 8.73 767 13.8 4.75
1113.81 1.56 9.37 -- -- -- -- -- -0.127 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 725.64 radiation 10.0 4320 < th dose dependent rect. 22 7
3 732.63 radiation 10.0 720 < th dose independent rect. 14 5
4 733.84 radiation 10.0 4320 < th dose dependent rect. 24 5
8 739.50 radiation 10.0 720 < th dose independent rect. 13 7
11 742.35 temperature 20.0 30 > th dose independent rect. 19 11
17 745.69 radiation 10.0 720 < th dose independent rect. 14 14
18 745.73 radiation 10.0 720 < th dose dependent rect. 13 6
22 746.31 radiation 10.0 720 < th dose dependent rect. 11 9
27 749.25 wind 7.0 4320 < th dose independent rect. 18 1
28 749.85 temperature 20.0 10 > th dose independent sin 11 NA
30 749.94 wind 7.0 4320 > th dose independent rect. 18 1
32 750.42 temperature 20.0 270 > th dose independent rect. 16 12
34 750.44 radiation 1.0 4320 < th dose independent rect. 22 7
37 750.84 wind 7.0 720 > th dose independent rect. 17 1
55 753.18 radiation 10.0 720 < th dose dependent rect. 13 15
59 753.84 wind 5.0 4320 > th dose dependent rect. 18 1
66 754.32 wind 7.0 4320 > th dose independent rect. 15 4
71 754.58 humidity 90.0 4320 < th dose independent rect. 7 1
74 754.71 wind 7.0 720 > th dose independent rect. 16 6
78 755.11 radiation 10.0 4320 < th dose dependent rect. 19 10
87 755.99 wind 7.0 4320 < th dose independent rect. 15 4
96 756.51 humidity 90.0 4320 > th dose independent rect. 7 1
155 758.45 wind 7.0 4320 > th dose dependent rect. 15 4
172 759.27 radiation 1.0 720 < th dose dependent rect. 13 3
182 759.70 wind 3.0 14400 < th dose dependent rect. 1 1
200 760.33 humidity 90.0 4320 > th dose independent rect. 6 5
212 760.57 radiation 10.0 4320 < th dose dependent rect. 4 1
213 760.58 radiation 10.0 720 > th dose independent rect. 11 6
215 760.58 humidity 90.0 4320 > th dose dependent rect. 6 3
225 760.86 radiation 10.0 720 > th dose independent rect. 11 19
243 761.07 humidity 90.0 4320 < th dose independent rect. 6 5
270 761.77 radiation 1.0 720 < th dose independent rect. 14 1
274 761.80 wind 7.0 720 < th dose independent rect. 13 8
278 761.96 wind 7.0 4320 > th dose dependent rect. 15 1
290 762.23 radiation 10.0 720 < th dose independent sin 16 NA
303 762.61 radiation 1.0 1440 > th dose independent rect. 4 1
313 762.61 radiation 1.0 1440 > th dose dependent rect. 4 1
343 763.08 radiation 20.0 1440 < th dose dependent rect. 11 1
424 765.22 humidity 60.0 14400 > th dose independent rect. 21 8
428 765.33 wind 7.0 720 > th dose independent sin 14 NA
447 765.88 precipitation 0.1 14400 < th dose independent rect. 13 1
448 765.88 precipitation 0.1 14400 < th dose dependent rect. 13 1
456 766.00 wind 7.0 720 > th dose dependent rect. 17 1
462 766.15 temperature 20.0 30 > th dose independent rect. 1 4
467 766.46 radiation 10.0 720 < th dose dependent sin 17 NA
480 766.78 radiation 10.0 720 < th dose independent rect. 16 1
491 767.04 wind 7.0 720 > th dose dependent rect. 15 11
502 767.28 wind 7.0 720 > th dose dependent rect. 15 9
503 767.29 humidity 60.0 14400 > th dose independent rect. 22 10
521 767.60 temperature 20.0 1440 < th dose independent rect. 6 1
533 767.90 precipitation 0.1 14400 > th dose independent rect. 13 1
539 767.99 temperature 20.0 10 < th dose independent sin 12 NA
550 768.14 radiation 10.0 720 > th dose independent sin 16 NA
560 768.39 wind 5.0 720 > th dose dependent rect. 17 5
567 768.47 radiation 10.0 1440 > th dose independent rect. 11 2
579 768.61 radiation 20.0 1440 < th dose dependent rect. 11 5
623 769.70 temperature 20.0 90 < th dose independent rect. 17 12
632 769.83 temperature 20.0 270 > th dose independent rect. 1 1
633 769.84 wind 7.0 720 < th dose independent sin 19 NA
636 769.84 wind 7.0 4320 > th dose independent rect. 13 18
648 770.00 temperature 20.0 1440 > th dose independent rect. 6 1
653 770.05 temperature 20.0 90 > th dose independent rect. 23 6
657 770.09 wind 7.0 720 < th dose independent rect. 13 5
680 770.39 wind 7.0 720 > th dose dependent rect. 15 3
707 770.68 precipitation 0.1 14400 > th dose dependent rect. 13 1
756 771.19 wind 7.0 4320 < th dose independent rect. 13 18
772 771.35 temperature 20.0 270 < th dose independent rect. 12 15
781 771.41 wind 1.0 270 < th dose independent rect. 23 3
867 772.36 humidity 60.0 14400 > th dose independent rect. 21 5
922 772.84 temperature 20.0 10 < th dose independent rect. 16 18
932 772.98 temperature 20.0 10 > th dose independent rect. 19 16
977 773.39 temperature 20.0 10 < th dose independent rect. 13 21