BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0684900 Os04g0684900|AK111712
(289 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0684900 Ribonuclease CAF1 family protein 564 e-161
Os09g0416800 Similar to CCR4-NOT transcription complex subu... 214 6e-56
Os02g0796300 Similar to CCR4-NOT transcription complex subu... 204 8e-53
Os07g0169800 199 2e-51
Os06g0138400 176 1e-44
Os10g0128300 137 1e-32
Os10g0123900 108 5e-24
Os10g0421700 98 7e-21
Os10g0124200 94 1e-19
Os06g0536000 90 2e-18
Os10g0421000 88 6e-18
Os10g0421600 84 1e-16
Os10g0420600 84 1e-16
Os08g0440300 Ribonuclease CAF1 family protein 79 5e-15
Os06g0503900 74 2e-13
Os10g0421200 69 4e-12
>Os04g0684900 Ribonuclease CAF1 family protein
Length = 289
Score = 564 bits (1454), Expect = e-161, Method: Compositional matrix adjust.
Identities = 276/289 (95%), Positives = 276/289 (95%)
Query: 1 MPSEFVAARKKPPVEIRRVWAHNVEEEFRIIRNAIDHFPYVSMDTEFPGVIHRPTKHPAL 60
MPSEFVAARKKPPVEIRRVWAHNVEEEFRIIRNAIDHFPYVSMDTEFPGVIHRPTKHPAL
Sbjct: 1 MPSEFVAARKKPPVEIRRVWAHNVEEEFRIIRNAIDHFPYVSMDTEFPGVIHRPTKHPAL 60
Query: 61 LTAGDRYDLLRRNVDALHLIQVGIXXXXXXXXXXXXXFEINLSDFDQRVHRHAAESVQLL 120
LTAGDRYDLLRRNVDALHLIQVGI FEINLSDFDQRVHRHAAESVQLL
Sbjct: 61 LTAGDRYDLLRRNVDALHLIQVGITLAASPTAAPALAFEINLSDFDQRVHRHAAESVQLL 120
Query: 121 AEHGVDLAAHRRHGVRASALAPLLMSSGLVCSHGAVKWVTFHSAYDFAYLVKLLMGRKLP 180
AEHGVDLAAHRRHGVRASALAPLLMSSGLVCSHGAVKWVTFHSAYDFAYLVKLLMGRKLP
Sbjct: 121 AEHGVDLAAHRRHGVRASALAPLLMSSGLVCSHGAVKWVTFHSAYDFAYLVKLLMGRKLP 180
Query: 181 RSMAEFLNLVRVFFGDEVYDVKHMMRHCGGELYGGLERVAAALQVKRAAGRCHQAASDSL 240
RSMAEFLNLVRVFFGDEVYDVKHMMRHCGGELYGGLERVAAALQVKRAAGRCHQAASDSL
Sbjct: 181 RSMAEFLNLVRVFFGDEVYDVKHMMRHCGGELYGGLERVAAALQVKRAAGRCHQAASDSL 240
Query: 241 LTWDVFRRMRELYFLKHGVEAYQGVLFGLELDMDMPSNKTPSLPLVAAR 289
LTWDVFRRMRELYFLKHGVEAYQGVLFGLELDMDMPSNKTPSLPLVAAR
Sbjct: 241 LTWDVFRRMRELYFLKHGVEAYQGVLFGLELDMDMPSNKTPSLPLVAAR 289
>Os09g0416800 Similar to CCR4-NOT transcription complex subunit 7
(CCR4-associated factor 1) (CAF1) (BTG1 binding factor
1)
Length = 280
Score = 214 bits (545), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 123/271 (45%), Positives = 158/271 (58%), Gaps = 15/271 (5%)
Query: 7 AARKKPPVEIRRVWAHNVEEEFRIIRNAIDHFPYVSMDTEFPGVIHRPTKHPALLTAGD- 65
AA K VEIR VW N+E EF +IR +D FPYV+MDTEFPGV+ RP + D
Sbjct: 5 AAEKPDGVEIREVWEDNLEAEFAVIREIVDDFPYVAMDTEFPGVVCRPLG--TFKSNADF 62
Query: 66 RYDLLRRNVDALHLIQVGIXXXXXXXXXXXX-------XFEINLSDFDQRVHRHAAESVQ 118
Y L+ NVD L LIQ+G+ ++ N FD R AA+S+
Sbjct: 63 NYATLKANVDMLKLIQLGLTFSNEHGGLPSLGPEGRPCVWQFNFRGFDPRTDVAAADSID 122
Query: 119 LLAEHGVDLAAHRRHGVRASALAPLLMSSGLVCSHGAVKWVTFHSAYDFAYLVKLLMGRK 178
LL G+D H G A A LLMSSG+V + V+WVTFHS YDF YL+KLL G
Sbjct: 123 LLRRSGIDFTRHSADGADARRFAELLMSSGVVM-NSEVRWVTFHSGYDFGYLLKLLTGTY 181
Query: 179 LPRSMAEFLNLVRVFFGDEVYDVKHMMRHCGGELYGGLERVAAALQVKRAAGRCHQAASD 238
LP ++ F +L+R++F VYD+KH+MR C L+GGL ++A L V+R G CHQA SD
Sbjct: 182 LPDTITGFFDLIRIYF-PVVYDIKHLMRFC-NSLHGGLNKLAELLDVER-VGICHQAGSD 238
Query: 239 SLLTWDVFRRMRELYFLKHGVEAYQGVLFGL 269
SLLT F++++E YF E Y GVL+GL
Sbjct: 239 SLLTALSFKKLKEAYF-NGLTEKYAGVLYGL 268
>Os02g0796300 Similar to CCR4-NOT transcription complex subunit 7
(CCR4-associated factor 1) (CAF1) (BTG1 binding factor
1)
Length = 295
Score = 204 bits (518), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 113/266 (42%), Positives = 159/266 (59%), Gaps = 15/266 (5%)
Query: 13 PVEIRRVWAHNVEEEFRIIRNAIDHFPYVSMDTEFPGVIHRPTKHPALLTAGD-RYDLLR 71
PVEIR VWA N+EEEF +IR+ +D FP+V+MDTEFPG++ RP A + D Y L+
Sbjct: 29 PVEIREVWADNLEEEFALIRDVVDEFPFVAMDTEFPGIVCRPVG--AFRSPADYNYATLK 86
Query: 72 RNVDALHLIQVGIXXXXXXXXXXX-------XXFEINLSDFDQRVHRHAAESVQLLAEHG 124
NVD LHLIQ+G+ ++ N +FD A++S++LL G
Sbjct: 87 ANVDMLHLIQLGLTFSSPRGELPALGPGRRRCVWQFNFREFDDARDIFASDSIELLRRSG 146
Query: 125 VDLAAHRRHGVRASALAPLLMSSGLVCSHGAVKWVTFHSAYDFAYLVKLLMGRKLPRSMA 184
+D + GV A A LLMSSG+V + +V WVTFH+ YDF YL+K+L LP + A
Sbjct: 147 IDFRRNSERGVDARRFAELLMSSGVVLND-SVYWVTFHAGYDFGYLLKILTCSSLPDTQA 205
Query: 185 EFLNLVRVFFGDEVYDVKHMMRHCGGELYGGLERVAAALQVKRAAGRCHQAASDSLLTWD 244
F L++++F VYD+KH+M+ C L+GGL ++A L V+R G HQA SDSL+T
Sbjct: 206 GFFKLMKIYF-PTVYDIKHLMKFCNS-LHGGLNKLAELLDVER-VGESHQAGSDSLVTSC 262
Query: 245 VFRRMRELYFLKHGVEAYQGVLFGLE 270
F ++++ +F E Y GVL+GL
Sbjct: 263 AFWKLKDSFF-AGSTEKYAGVLYGLN 287
>Os07g0169800
Length = 367
Score = 199 bits (506), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 117/272 (43%), Positives = 152/272 (55%), Gaps = 21/272 (7%)
Query: 14 VEIRRVWAHNVEEEFRIIRNAIDHFPYVSMDTEFPGVIHRPTKHPALLTAGDRYDLLRRN 73
V++R VWAHN++EE +I + F ++DTEFPG +HRP+ LT +Y LL++N
Sbjct: 90 VKVRSVWAHNLDEEANLIESLFPSFRLAAVDTEFPGTVHRPSAPAYTLTRKQKYALLKKN 149
Query: 74 VDALHLIQVGIXXXXX--------XXXXXXXXFEINLSDFDQRVHRHAAESVQLLAEHGV 125
VD LHL+Q+G+ +E N +FD R H HA ES+ LL GV
Sbjct: 150 VDELHLVQLGLTLFDAGGRLPDLGTGGAARYVWEFNFREFDLRRHAHAPESIALLRSKGV 209
Query: 126 DLAAHRRHGVRASALAPLL---MSSGLVCSHGAVKWVTFHSAYDFAYLVKLLMGR----- 177
D RR GV A+A P L + +GL G VTF AYD AY++K+L G
Sbjct: 210 DFDRTRRGGVDAAAFGPRLRRWLRAGL----GRAGLVTFSGAYDLAYMLKMLYGGGGGGY 265
Query: 178 KLPRSMAEFLNLVRVFFGDEVYDVKHMMRHCGGELYGGLERVAAALQVKRAAGRCHQAAS 237
+LP A F +VR G +YDV M RHC G++ GGLERVA L V+RA G HQA S
Sbjct: 266 RLPGDAATFEFVVRAVIGRTLYDVGKMARHCPGDMRGGLERVAGKLGVRRAVGEAHQAGS 325
Query: 238 DSLLTWDVFRRMRELYF-LKHGVEAYQGVLFG 268
DSLLT +F RMRE YF + + A G+ FG
Sbjct: 326 DSLLTSQMFMRMRERYFDDQDALTAVAGINFG 357
>Os06g0138400
Length = 375
Score = 176 bits (447), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 116/259 (44%), Positives = 146/259 (56%), Gaps = 6/259 (2%)
Query: 14 VEIRRVWAHNVEEEFRIIRNAIDHFPYVSMDTEFPGVIHRPTKHPALLTAGDRYDLLRRN 73
VE+R VWA N+EEE R I + +P VSMDTEFPG +H L T + Y +++RN
Sbjct: 110 VEVRDVWAANLEEELRSIGALLPTYPVVSMDTEFPGTVHDVATPRHLRTPRESYAVVKRN 169
Query: 74 VDALHLIQVGIXXXXXXXXXXXXXFEINLSDFDQRVHRHAAESVQLLAEHGVDLAAHRRH 133
VD LHL+Q+ ++ N + FD R H+ SV +LA HGVD A RRH
Sbjct: 170 VDELHLLQL-GLALSGPAGRCPVAWQFNFAGFDARRDPHSGSSVAMLAAHGVDFTALRRH 228
Query: 134 GVRASALAPLLMSSGLVCSHGAVKWVTFHSAYDFAYLVKLLM-GRKLPRSMAEFLNLVRV 192
G+ A S L C G + W F +YDFAYLVK+L GR LP ++ F+ V
Sbjct: 229 GIDHGDFARAFGRSKLAC--GRLTWAAFSGSYDFAYLVKVLTGGRPLPSTLEGFMAKVSK 286
Query: 193 FFGDEVYDVKHMMRHC--GGELYGGLERVAAALQVKRAAGRCHQAASDSLLTWDVFRRMR 250
FG V DVKH+ + C GG + GGLE VAAAL V RAAGR H A SDSLLT DV M
Sbjct: 287 IFGPAVLDVKHLAKFCGGGGGIRGGLEHVAAALGVHRAAGRAHNAGSDSLLTSDVLHAMV 346
Query: 251 ELYFLKHGVEAYQGVLFGL 269
+ +F GV + G + GL
Sbjct: 347 DRFFPNSGVLNHAGAIDGL 365
>Os10g0128300
Length = 291
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 131/254 (51%), Gaps = 14/254 (5%)
Query: 10 KKPP---VEIRRVWAHNVEEEFRIIRNAIDHFPYVSMDTEFPGVIHRPTKHPALLTAGDR 66
+PP V R+V A N+ E +IR+ + FP+V++DT+FPGV+H P A +TA DR
Sbjct: 24 TQPPARAVHTRKVTAVNLHREMSLIRSLMPTFPFVAVDTQFPGVVH-PHPRGAGVTADDR 82
Query: 67 YDLLRRNVDALHLIQVGIXXXXXXX------XXXXXXFEINLSDFDQRVHRHAAESVQLL 120
Y +R N D L L+Q+GI ++ + + FD R HRHA ESVQ L
Sbjct: 83 YAAVRANADELCLLQLGITLSAADGRLPVDGALVEFMWDFDFAGFDARYHRHAPESVQFL 142
Query: 121 AEHGVDLAAHRRHGVRASALAPLLMSSGLVCSHGAVKWVTFHSAYDFAYLVKLLM-GRKL 179
G D A R GV A A A L +SG++ G V WV F YD A+L++L G L
Sbjct: 143 RAQGFDFEAARLAGVPALAFAAELAASGILGLRG-VTWVAFGGMYDVAFLLRLATGGAPL 201
Query: 180 PRSMAEFLNLVRVFFGDEVYDVKHMMRHCGGELYGGLERVAAALQVKRAAGRCHQAASDS 239
P + FL V FG +V+D KHM ++GGL V L++ R H A +S
Sbjct: 202 PATRLGFLAQVGAVFGTQVFDAKHMASLL--HMHGGLAAVGGMLRLPPQLPRRHMAGQNS 259
Query: 240 LLTWDVFRRMRELY 253
++ +F +R +
Sbjct: 260 VMAIQLFMELRRRF 273
>Os10g0123900
Length = 260
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 122/262 (46%), Gaps = 18/262 (6%)
Query: 21 AHNVEEEFRIIRNAIDHFPYVSMDTEFPGVIHRPTKHPALLTAGDRYDLLRRNVDALHLI 80
A N++ E +I + +PYV++D EF GV+H P + T + Y L+ NVD + +
Sbjct: 3 AANLDSEMGLIGEMMVQYPYVTIDVEFAGVVHHPPYTGSRPTPDEIYAALKSNVDEVPAV 62
Query: 81 QVGIXXX---------XXXXXXXXXXFEINLSDFDQRVHRHAAESVQLLAEHGVDLAAHR 131
Q+GI +E+ SDFD H +SV+ L G+D R
Sbjct: 63 QIGITLSDAEGNLPTRSSSSPEQEIAWEVVFSDFDAGRDPHVVDSVEFLKNQGIDFDLAR 122
Query: 132 RHGVRASALAPLLMSSGLVCS-HGAVKWVTFHSAYDFAYLVKLLM-GRKLPRSMAEFLNL 189
+ GV ++A L++ S G + W F AYD YL+K+L G+ LP + +F+ L
Sbjct: 123 QIGVTSTAFGEKLLAILPPPSRRGELTWSAFGGAYDMGYLLKMLTGGQPLPETRQQFMQL 182
Query: 190 VRV-FFGDEVYDVKHMMRHCGGEL-YGGLERVAAALQVKRAAGRCHQAASDSLLTWDVFR 247
V+ G ++D K+++ H +L GL A L V++ G A S++ +F
Sbjct: 183 VKSRLGGGRIFDSKYLVEHDRQDLRNAGLRHTADVLGVRQQEGVKMLAGHKSVVAAAIFA 242
Query: 248 RMRELYFLKHGVEAYQGVLFGL 269
+R GV GV+ G+
Sbjct: 243 TIR-----SQGVHLLHGVIDGI 259
>Os10g0421700
Length = 1172
Score = 98.2 bits (243), Expect = 7e-21, Method: Composition-based stats.
Identities = 87/279 (31%), Positives = 131/279 (46%), Gaps = 39/279 (13%)
Query: 16 IRRVWAHNVEEEFRIIRNAIDHFP----YVSMDTEFPG-----VIHRPTKHPALLTAGDR 66
++ VW N E+F+++ A+ H P Y+++D EF V HRP +T+
Sbjct: 648 VQSVWRENCMEQFKLVLEAL-HQPHRHLYIAVDMEFAADAATNVSHRP------VTSISC 700
Query: 67 YDLLRRNVDALHLIQVGIXXXXX----XXXXXXXXFEINLSDFDQRVHRHAAESVQLLAE 122
Y +RR V+ + Q+G+ EIN DF+ ++ +S+ L+
Sbjct: 701 YQHMRRYVNGGGIFQMGLTFAFVGEGEQAPSPLIALEINF-DFNVNSPKYHGKSIDFLSS 759
Query: 123 HGVDLAAHRRHGVRASALAPLLMSSGLV----CSHGAVKWVTFHSAYDFAYLVKLLMGRK 178
G DL H + GV AP + GL+ G+V WV FH YD A+L++LL G
Sbjct: 760 QGHDLTQHSKRGV-----APEFVYEGLLRHLPFGDGSVTWVAFHGDYDLAFLLRLLQGGD 814
Query: 179 ------LPRSMAEFLNLVRVFFGDEVYDVKHMMRHCGGELYGGLERVAAALQVKRAAGRC 232
LP +A FL VR F VYDV+ + + G L +A L + R G
Sbjct: 815 HGGNCLLPPKLATFLQKVREKF-PVVYDVRVLGKLVKDGFNGSLTALAEYLGIPR-NGDE 872
Query: 233 HQAASDSLLTWDVFRRMRELYFLK-HGVEAYQGVLFGLE 270
H A SD+LLT F ++ L + H ++A +G+L GLE
Sbjct: 873 HHAGSDALLTLSCFFKIVSLSGHQMHRMDARRGLLAGLE 911
>Os10g0124200
Length = 295
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 128/293 (43%), Gaps = 43/293 (14%)
Query: 14 VEIRRVWAHNVEEEFRIIRNAIDHFPYVSMDTEFPGVIHRPTKHPALLT----------- 62
V IRRV A N+ E IR+ + +FPY+++ ++P V + +H
Sbjct: 10 VLIRRVTADNLAVEMLTIRSHLPYFPYITIHADYP-VDNAAARHGRRRRRRRGGGRGNKR 68
Query: 63 ---AGDR-YDLLRRNVDALHLIQVGIXXX--------------XXXXXXXXXXFEINLSD 104
A +R Y L + VD L ++Q+GI +++ SD
Sbjct: 69 ESEADERCYRLAKSRVDELDVLQLGITLCDHHGRLPATAIACPGGAAVAVEMAWQVGFSD 128
Query: 105 FDQRVHRHAAESVQLLAEHGVDLAAHRRHGVRASALAPLLMSSGLVCSH--GAVKWVTFH 162
FD + +V L GVDL R GV A+ L +V + G + WV F
Sbjct: 129 FDV-----SQSAVDALRAAGVDLEHLRARGVPAAVFGQALRVFDIVSAANLGRLTWVAFG 183
Query: 163 SAYDFAYLVKLL-MGRKLPRSMAEFLNLVRVFFGDEVYDVKHMMRHC---GGELYGGLER 218
YDF +L+K+L GR LP + F + +R G VYD K++ G EL GGL R
Sbjct: 184 GLYDFGFLLKMLDGGRPLPETAEGFASRLRGHLG-VVYDAKYVAARLPMDGVELRGGLVR 242
Query: 219 VAAALQVKRAA-GRCHQAASDSLLTWDVFRRMRELYFLKHGVEAYQGVLFGLE 270
VA L AA QA SL+ VF RM L+F H V + G + GLE
Sbjct: 243 VARVLGAPAAAVEEPRQAGEKSLVASQVFIRMTGLFFAYHDVAVHAGKIDGLE 295
>Os06g0536000
Length = 273
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 100/226 (44%), Gaps = 29/226 (12%)
Query: 16 IRRVWAHNVEEEFRIIRNAIDHFPYVSMDTEFPGVIHRPTKHPAL------LTAGDRYDL 69
+R VWA N E I+R Y +++ ++PG + LTA +RY +
Sbjct: 5 VRSVWADNFAAESAILRAVAPCAVYAAINVQYPGCVVSAAGGAGDHRCYYDLTAEERYQV 64
Query: 70 LRRNVDALHLIQVGIXXXXXXXXXXXXXFEINLSDFDQRVHRHAAE--SVQLLAEHGVDL 127
+R N D L +Q+G+ +E NL++FD E SV L G+D
Sbjct: 65 VRANADELKPLQLGLAVRTADGGRFA--WEFNLNEFDLAADGDMCEPGSVDYLRHRGMDF 122
Query: 128 AAHRRHGVRASALAPLLMSSGLVCSHGAVKWVTFHSAYDFAYLVKLLM------------ 175
A GV A++L LL SSGL+ + W TF AY AY ++LM
Sbjct: 123 NALPWSGVGAASLGRLLWSSGLLAAR--PSWATFAGAYHVAYFARILMLAVAVAGTGGGG 180
Query: 176 -GRKLPRSMAEFLNLVRVFFGDEVYDVKHMMRHCGGELYGGLERVA 220
R+LP + F +VR G VYDV+ + GEL G L VA
Sbjct: 181 AARRLPADVGGFEEMVRSLLGHHVYDVRLL----AGELRGPLADVA 222
>Os10g0421000
Length = 696
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 124/279 (44%), Gaps = 33/279 (11%)
Query: 14 VEIRRVWAHNVEEEFRIIRNAIDHFP----YVSMDTEFPGVIHRPTKHPALLTAGDRYDL 69
V ++RVW N E F+ + +A P Y++ D EF H Y+
Sbjct: 162 VSVQRVWQGNYPEMFKPVLDAFGQ-PHRRIYIAFDFEFAADAFT-NMHCWPGCTKTNYEY 219
Query: 70 LRRNVDALHLIQVGIXXXXXXXXXXXXXF-----EINLSDFDQRVHRHAAESVQLLAEHG 124
LRR V+ ++Q+G+ F EIN DF + ++ E++ L+E G
Sbjct: 220 LRRYVNGGDVVQMGLAFVFEDEVDEEPTFTAMALEINF-DFTVELRKYNGEAISFLSEQG 278
Query: 125 VDLAAHRRHGVRASALAPLLMSSGLVC----SHGAVKWVTFHSAYDFAYLVKLLMG---- 176
DL HR GV P + +GL+ + +V W+ +H YDF + ++LL G
Sbjct: 279 HDLTEHRDRGV-----VPHFVYTGLLSHLPFGNSSVTWIAYHGDYDFGFFLRLLQGGCRG 333
Query: 177 -RKLPRSMAEFLNLVRVFFGDEVYDVKHMMRHCGGELYGGLERVAAALQVKRAAGRCHQA 235
LP + FL+ +R+ F +YD++ + + G L +A L V R GR H A
Sbjct: 334 SSHLPLELPTFLHQLRLNF-PRLYDIRVLGQLVQHGFRGSLTAIADLLGVNR-FGRGHHA 391
Query: 236 ASDSLLTWDVFRRMRELYFLK-----HGVEAYQGVLFGL 269
D+LLT F ++ H +++ QG+L G+
Sbjct: 392 GVDALLTLSCFFQIVSCLSASGDHQLHRLDSRQGLLAGI 430
>Os10g0421600
Length = 1032
Score = 84.0 bits (206), Expect = 1e-16, Method: Composition-based stats.
Identities = 77/280 (27%), Positives = 126/280 (45%), Gaps = 45/280 (16%)
Query: 16 IRRVWAHNVEEEFRIIRNAIDH---FPYVSMDTEFPG-----VIHRPTKHPALLTAGDRY 67
++ VW N E+F+++ +A++ Y+++D EF + RP +T+ Y
Sbjct: 553 VKSVWRENYREQFKLVVDALNQPRRHLYIAVDMEFAADATTNIRRRP------VTSTGCY 606
Query: 68 DLLRRNVDALHLIQVGIX--------XXXXXXXXXXXXFEINLSDFDQRVHRHAAESVQL 119
LR V+ ++Q+G+ EIN + + ++ +S+
Sbjct: 607 HHLREFVNRGDIVQMGLTFVFVGDGEQSSSSSSPPPITLEINFK-INIKARKYNKKSIAF 665
Query: 120 LAEHGVDLAAHRRHGVRASALAPLLMSSGLVCSHGAVKWVTFHSAYDFAYLVKLLMGR-- 177
L+ G DL HRR GV +P + G +V W+ +H YD ++L+ LL
Sbjct: 666 LSRQGHDLREHRRRGV-----SPRRVYDGR-----SVTWLAYHGDYDLSFLLHLLQRGGR 715
Query: 178 -----KLPRSMAEFLNLVRVFFGDEVYDVKHMMRHCGGELYGGLERVAAALQVKRAAGRC 232
LPR +A FL +R F YDV+ G G L +A L ++R G
Sbjct: 716 RRGGGDLPRQLATFLRRLRENF-PAFYDVRADAEDHG--FSGKLTGLAEHLGIRRTGGAA 772
Query: 233 HQAASDSLLTWDVFRRM-RELYFLK-HGVEAYQGVLFGLE 270
H A SD+LLT F ++ R L + H ++A +G+L GLE
Sbjct: 773 HHAGSDALLTLSCFFKIFRSLSGQQLHQLDARRGLLAGLE 812
>Os10g0420600
Length = 647
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 127/279 (45%), Gaps = 30/279 (10%)
Query: 16 IRRVWAHNVEEEFRIIRNAIDHFP----YVSMDTEFPGVIHRPTKHPALLTAGDRYDLLR 71
++ VW N E+F+++ +A+ H P Y+++D EF + + + G Y LR
Sbjct: 158 VKSVWRENYREQFKLVVDAL-HQPRRHLYIAVDMEFAADATTNIRRRPVTSTG-CYHHLR 215
Query: 72 RNVDALHLIQVGIX--------XXXXXXXXXXXXFEINLSDFDQRVHRHAAESVQLLAEH 123
V+ ++Q+G+ EIN + + ++ +S+ L+
Sbjct: 216 EFVNRGDIVQMGLAFVFVGGGEQSSSSSSPPPITLEINFK-INIKARKYNKKSIAFLSRQ 274
Query: 124 GVDLAAHRRHGVRASALAPLLMSSGLVCSHGAVKWVTFHSAYDFAYLVKLLM-------G 176
G DL HRR GV L+ +V W+ +HS YD +L++LL G
Sbjct: 275 GHDLREHRRRGVSPRRFYEGLLRHLPFGDGRSVTWLAYHSDYDLGFLLRLLQCGGRRRGG 334
Query: 177 RKLPRSMAEFLNLVRVFFGDEVYDVK---HMMRHCGGELYGGLERVAAALQVKRAAGRCH 233
LPR +A FL +R F YDV+ M+ G G L +A L ++R G H
Sbjct: 335 GDLPRQLAAFLRRLRENF-PAFYDVRVIRQMLEDHG--FSGKLTGLAEHLGIRRTGGAAH 391
Query: 234 QAASDSLLTWDVFRRM-RELYFLK-HGVEAYQGVLFGLE 270
A SD+LLT F ++ R L + H ++A +G+L GLE
Sbjct: 392 HAGSDALLTLSCFFKIFRSLSGQQLHQLDARRGLLAGLE 430
>Os08g0440300 Ribonuclease CAF1 family protein
Length = 93
Score = 78.6 bits (192), Expect = 5e-15, Method: Composition-based stats.
Identities = 43/96 (44%), Positives = 62/96 (64%), Gaps = 5/96 (5%)
Query: 189 LVRVFFGDEVYDVKHMMRHCGGELYGGLERVAAALQVKRAAGRCHQAASDSLLTWDVFRR 248
L+R++F +YD+KH+MR C L+GGL R+ L VKR G CHQA SDSLLT + +
Sbjct: 1 LIRIYF-PVLYDIKHLMRFCS-NLHGGLSRLGELLDVKRV-GTCHQAGSDSLLTLGCYNK 57
Query: 249 MRELYFLKHGVEAYQGVLFGLELDMDMPSNKTPSLP 284
++E+YF K E + GVL+GL ++ D + P+ P
Sbjct: 58 IKEVYF-KGSTEKHAGVLYGLVIE-DGVNRPPPTQP 91
>Os06g0503900
Length = 410
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 100/247 (40%), Gaps = 13/247 (5%)
Query: 16 IRRVWAHNVEEEFRIIRNAIDHFPYVSMDTEFPG--VIHRPT---KHPALLTAGDRYDLL 70
I VW N + E + +V++ ++PG V T K LTA RYD++
Sbjct: 17 IHSVWHDNFDAESAQLLAVAPRAVHVAVSVQYPGCAVAQAGTSGRKKYGSLTAEKRYDMV 76
Query: 71 RRNVDALHLIQVGIXXXXX---XXXXXXXXFEINLSDFD--QRVHRHAAESVQLLAEHGV 125
+ N+D LH IQVG+ FE NL FD S+ L GV
Sbjct: 77 KANIDELHPIQVGLAIRANDDDGDSGELVVFEFNLRGFDINNPADLRDPASIAHLRGRGV 136
Query: 126 DLAAHRRHGVRASALAPLLMSSGLVCSHGAVKWVTFHSAYDFAYLVKLLMGRKLPRSMAE 185
D GV L LL+ S W TF AY YL+K+L G +LP +
Sbjct: 137 DFGRLPCAGVEPHRLRLLLLGS--GLLQAWPSWATFTGAYHVGYLMKILTGAELPSGLDA 194
Query: 186 FLNLVRVFFGDEVYDVKHMMRHCGGELYGGLERVAAALQVKRAAGRCHQAAS-DSLLTWD 244
F + G+ VYDVK + L +AA + V A + AS ++ T
Sbjct: 195 FTTMATGTLGEGVYDVKRLAAEVNTACGFSLREIAACIGVVPVAAQHGMVASAGAVSTLQ 254
Query: 245 VFRRMRE 251
F+ +RE
Sbjct: 255 CFKALRE 261
>Os10g0421200
Length = 722
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 32/180 (17%)
Query: 16 IRRVWAHNVEEEFRIIRNAIDHFP----YVSMDTEFP-----GVIHRPTKHPALLTAGDR 66
++ VW N E+F+++ A+ H P Y+++D EF + HRP +T+
Sbjct: 329 VQSVWQENCMEQFKLVLEAL-HQPHRNLYIAVDMEFTADAATNMSHRP------VTSTSC 381
Query: 67 YDLLRRNVDALHLIQVGIXXXXXXXXXXXXX------FEINLSDFDQRVHRHAAESVQLL 120
Y +RR V+ ++Q+G+ EIN DF+ ++ ES+ L
Sbjct: 382 YQHVRRYVNGGDIVQMGLTFAFVGDVEGEQAPSPPIALEINF-DFNVNSPKYHGESIHFL 440
Query: 121 AEHGVDLAAHRRHGVRASALAPLLMSSGLV----CSHGAVKWVTFHSAYDFAYLVKLLMG 176
+ G DL H + GV P + GL+ G+V WV +H YD A+L++LL G
Sbjct: 441 SSQGHDLTQHSKRGV-----TPEFVYEGLLRHLPFGDGSVTWVAYHGDYDLAFLLRLLQG 495
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.139 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,634,889
Number of extensions: 364799
Number of successful extensions: 1175
Number of sequences better than 1.0e-10: 17
Number of HSP's gapped: 1131
Number of HSP's successfully gapped: 17
Length of query: 289
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 189
Effective length of database: 11,814,401
Effective search space: 2232921789
Effective search space used: 2232921789
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 155 (64.3 bits)