Os09g0416800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CCR4-NOT transcription complex subunit 7 (CCR4-associated factor 1) (CAF1) (BTG1 binding factor 1).
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Os09g0416800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CCR4-NOT transcription complex subunit 7 (CCR4-associated factor 1) (CAF1) (BTG1 binding factor 1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.61 | 0.186 | 13.1 | 0.487 | 0.429 | -0.527 | -0.4 | -0.873 | -0.0194 | 4.11 | 20.53 | 121 | -- | -- |
| 15.93 | 0.186 | 13.1 | 0.638 | 0.416 | -0.584 | -0.137 | -- | 0.024 | 4.31 | 21.91 | 107 | -- | -- |
| 15.84 | 0.185 | 13.1 | 0.555 | 0.426 | -0.532 | -- | -0.471 | 0.00223 | 4.41 | 21.44 | 107 | -- | -- |
| 15.97 | 0.186 | 13.1 | 0.643 | 0.419 | -0.576 | -- | -- | 0.0237 | 4.37 | 21.83 | 108 | -- | -- |
| 21.68 | 0.217 | 13.1 | 0.746 | -- | -0.936 | -- | 0.316 | 0.062 | -- | 23.86 | 142 | -- | -- |
| 21.5 | 0.217 | 13.1 | 0.519 | 0.643 | -- | 0.0153 | -- | -0.0696 | 4.08 | -- | -- | -- | -- |
| 21.5 | 0.217 | 13.1 | 0.519 | 0.643 | -- | -- | -- | -0.0696 | 4.08 | -- | -- | -- | -- |
| 21.72 | 0.217 | 13.1 | 0.697 | -- | -0.913 | -- | -- | 0.0501 | -- | 23.79 | 142 | -- | -- |
| 26.02 | 0.238 | 13.1 | -- | 0.48 | -0.427 | -- | -- | -0.0873 | 4.38 | 23.75 | 90 | -- | -- |
| 43.98 | 0.31 | 13.1 | 0.545 | -- | -- | -- | -- | -0.0525 | -- | -- | -- | -- | -- |
| 28.6 | 0.25 | 13.1 | -- | 0.653 | -- | -- | -- | -0.127 | 4.06 | -- | -- | -- | -- |
| 34.01 | 0.272 | 13.1 | -- | -- | -0.804 | -- | -- | -0.0469 | -- | 24.2 | 145 | -- | -- |
| 51.83 | 0.336 | 13.1 | -- | -- | -- | -- | -- | -0.113 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.32 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 22 | 15.02 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 29 | 15.06 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 22 |
| 68 | 15.38 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 90 | 15.52 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 114 | 15.63 | temperature | 10 | 10 | > th | dose dependent | sin | 20 | NA |
| 128 | 15.69 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 161 | 15.80 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 192 | 15.90 | temperature | 20 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 227 | 16.03 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 232 | 16.04 | temperature | 20 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 270 | 16.12 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 279 | 16.14 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 23 |
| 299 | 16.19 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 19 |
| 312 | 16.20 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 320 | 16.23 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 21 |
| 322 | 16.23 | temperature | 30 | 90 | < th | dose dependent | sin | 23 | NA |
| 371 | 16.30 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 382 | 16.33 | temperature | 30 | 10 | < th | dose dependent | sin | 22 | NA |
| 405 | 16.37 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 440 | 16.42 | temperature | 20 | 720 | > th | dose dependent | sin | 3 | NA |
| 441 | 16.42 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 16 |
| 445 | 16.42 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 500 | 16.49 | temperature | 20 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 602 | 16.62 | temperature | 20 | 90 | > th | dose dependent | rect. | 11 | 16 |
| 603 | 16.62 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 17 |
| 722 | 16.69 | temperature | 25 | 270 | > th | dose independent | rect. | 11 | 23 |
| 911 | 16.77 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 969 | 16.80 | temperature | 25 | 270 | < th | dose independent | rect. | 12 | 23 |