BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0369400 Os08g0369400|J065116P10
(201 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0369400 Ankyrin repeat containing protein 379 e-106
Os03g0695400 Ankyrin repeat containing protein 278 3e-75
Os02g0601700 Ankyrin repeat containing protein 172 2e-43
Os09g0537800 Ankyrin repeat containing protein 119 1e-27
Os05g0298200 Ankyrin repeat containing protein 96 2e-20
>Os08g0369400 Ankyrin repeat containing protein
Length = 201
Score = 379 bits (973), Expect = e-106, Method: Compositional matrix adjust.
Identities = 189/201 (94%), Positives = 189/201 (94%)
Query: 1 ATARLSRAPPDPIRSRPDRFPSPWQITAPSTRIPRFRVAGLHSRRPRSARIAGPHHRRCR 60
ATARLSRAPPDPIRSRPDRFPSPWQITAPSTRIPRFRVAGLHSRRPRSARIAGPHHRRCR
Sbjct: 1 ATARLSRAPPDPIRSRPDRFPSPWQITAPSTRIPRFRVAGLHSRRPRSARIAGPHHRRCR 60
Query: 61 PRSARIAGXXXXXXXXXXXXICTAPDEFNPCAALLECECKNSAAAENTLLRAGYGGWLLY 120
PRSARIAG ICTAPDEFNPCAALLECECKNSAAAENTLLRAGYGGWLLY
Sbjct: 61 PRSARIAGPHHRRRRPRSPSICTAPDEFNPCAALLECECKNSAAAENTLLRAGYGGWLLY 120
Query: 121 SAASAGDMAFVQELMDRDPLLVFGEGEHGVMDMFYAAARGGNAEVFKLLLDHAMSPRCST 180
SAASAGDMAFVQELMDRDPLLVFGEGEHGVMDMFYAAARGGNAEVFKLLLDHAMSPRCST
Sbjct: 121 SAASAGDMAFVQELMDRDPLLVFGEGEHGVMDMFYAAARGGNAEVFKLLLDHAMSPRCST 180
Query: 181 NCPNGEGAGAVVAAPRCSGWK 201
NCPNGEGAGAVVAAPRCSGWK
Sbjct: 181 NCPNGEGAGAVVAAPRCSGWK 201
>Os03g0695400 Ankyrin repeat containing protein
Length = 162
Score = 278 bits (710), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 142/177 (80%), Positives = 144/177 (81%), Gaps = 15/177 (8%)
Query: 25 QITAPSTRIPRFRVAGLHSRRPRSARIAGPHHRRCRPRSARIAGXXXXXXXXXXXXICTA 84
QITAPSTRIPR RVAGLHSRRPRSAR+A G ICTA
Sbjct: 1 QITAPSTRIPRLRVAGLHSRRPRSARVA---------------GPHHRRRRPRSPSICTA 45
Query: 85 PDEFNPCAALLECECKNSAAAENTLLRAGYGGWLLYSAASAGDMAFVQELMDRDPLLVFG 144
PDEFNPC ALLECECKN AAAENTLLRAGYGGWLLYSAASAGDMAFVQELMDRDPLLVFG
Sbjct: 46 PDEFNPCTALLECECKNGAAAENTLLRAGYGGWLLYSAASAGDMAFVQELMDRDPLLVFG 105
Query: 145 EGEHGVMDMFYAAARGGNAEVFKLLLDHAMSPRCSTNCPNGEGAGAVVAAPRCSGWK 201
EGE+GV DMFYAAARGGNAEVFKLLLDHAMSPRCSTNCPN EGA AVVAAPRCSGWK
Sbjct: 106 EGEYGVTDMFYAAARGGNAEVFKLLLDHAMSPRCSTNCPNREGAAAVVAAPRCSGWK 162
>Os02g0601700 Ankyrin repeat containing protein
Length = 717
Score = 172 bits (435), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 82/95 (86%), Positives = 86/95 (90%), Gaps = 4/95 (4%)
Query: 94 LLECECKNSAAA----ENTLLRAGYGGWLLYSAASAGDMAFVQELMDRDPLLVFGEGEHG 149
LLECEC + A ENTLLRAGYGGWLLYSAASAGDMAFVQELM+RDPLLVFGEGE+G
Sbjct: 88 LLECECSKNGGAAAAAENTLLRAGYGGWLLYSAASAGDMAFVQELMERDPLLVFGEGEYG 147
Query: 150 VMDMFYAAARGGNAEVFKLLLDHAMSPRCSTNCPN 184
V DMFYAAARGGNAEVF+LLLDHAMSPRCSTNCPN
Sbjct: 148 VTDMFYAAARGGNAEVFRLLLDHAMSPRCSTNCPN 182
>Os09g0537800 Ankyrin repeat containing protein
Length = 113
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/60 (91%), Positives = 56/60 (93%)
Query: 128 MAFVQELMDRDPLLVFGEGEHGVMDMFYAAARGGNAEVFKLLLDHAMSPRCSTNCPNGEG 187
MAFVQE MDRDPLLVFGEGE+GV DMFYAAARGGNAEVF LLLDHAMSP CSTNCPNGEG
Sbjct: 1 MAFVQEFMDRDPLLVFGEGEYGVTDMFYAAARGGNAEVFGLLLDHAMSPTCSTNCPNGEG 60
>Os05g0298200 Ankyrin repeat containing protein
Length = 533
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 73/106 (68%), Gaps = 9/106 (8%)
Query: 94 LLECECKNSAAAE-----NTLLRAGYGGWLLYSAASAGDMAFVQELMDRDPLLVFGEGEH 148
L +CE AAA N L+RAGYGGWLLY+AA+AGD AFV+EL+ R PLLVFGEGE+
Sbjct: 88 LHDCEPPRGAAAGGGSRPNRLIRAGYGGWLLYTAAAAGDAAFVRELLGRQPLLVFGEGEY 147
Query: 149 GVMDMFYAAARGGNAEVFKLLLDHAMS-PRCSTNCPNGEGAGAVVA 193
GV D+ YAAAR ++EVF+LLL +S P CS GEG G A
Sbjct: 148 GVTDVLYAAARSDSSEVFRLLLSAVLSPPECSA---GGEGDGGTAA 190
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.136 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,961,727
Number of extensions: 354152
Number of successful extensions: 1105
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1101
Number of HSP's successfully gapped: 5
Length of query: 201
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 105
Effective length of database: 12,023,257
Effective search space: 1262441985
Effective search space used: 1262441985
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)