Os02g0601700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ankyrin repeat containing protein.
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Os02g0601700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ankyrin repeat containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 266.06 | 0.766 | 9 | -1.43 | 2.78 | 1.57 | -0.5 | -1.51 | 0.175 | 22.4 | 28.3 | 1160 | -- | -- |
| 265.83 | 0.759 | 8.96 | -1.14 | 2.79 | 1.45 | -0.503 | -- | 0.203 | 22.4 | 27.86 | 1153 | -- | -- |
| 266.51 | 0.76 | 9 | -1.32 | 2.77 | 1.54 | -- | -0.972 | 0.127 | 22.4 | 27.69 | 1151 | -- | -- |
| 266.71 | 0.761 | 8.98 | -1.15 | 2.75 | 1.47 | -- | -- | 0.127 | 22.4 | 27.33 | 1141 | -- | -- |
| 592.46 | 1.13 | 9.11 | -2.64 | -- | 3.61 | -- | -4.83 | -0.514 | -- | 24.24 | 884 | -- | -- |
| 349.95 | 0.877 | 8.99 | -0.748 | 3 | -- | -0.199 | -- | 0.0958 | 22.6 | -- | -- | -- | -- |
| 350.11 | 0.876 | 8.99 | -0.74 | 3 | -- | -- | -- | 0.0962 | 22.6 | -- | -- | -- | -- |
| 605 | 1.15 | 8.99 | -1.49 | -- | 3.25 | -- | -- | -0.226 | -- | 24.4 | 873 | -- | -- |
| 299.97 | 0.807 | 8.97 | -- | 2.74 | 1.31 | -- | -- | 0.212 | 22.4 | 27.21 | 1123 | -- | -- |
| 903.91 | 1.4 | 8.91 | -0.686 | -- | -- | -- | -- | 0.11 | -- | -- | -- | -- | -- |
| 364.56 | 0.893 | 8.97 | -- | 3 | -- | -- | -- | 0.179 | 22.5 | -- | -- | -- | -- |
| 660.36 | 1.2 | 8.94 | -- | -- | 2.91 | -- | -- | -0.026 | -- | 24.5 | 865 | -- | -- |
| 916.33 | 1.41 | 8.89 | -- | -- | -- | -- | -- | 0.186 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 266.35 | radiation | 1.0 | 270 | < th | dose independent | rect. | 5 | 19 |
| 2 | 266.44 | radiation | 20.0 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 3 | 266.73 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 17 |
| 4 | 266.75 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 5 | 19 |
| 5 | 266.81 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 16 | 16 |
| 8 | 267.17 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 5 | 19 |
| 13 | 269.47 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 20 | 270.17 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 29 | 271.34 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 45 | 272.12 | radiation | 20.0 | 1440 | > th | dose independent | sin | 12 | NA |
| 60 | 273.01 | temperature | 25.0 | 720 | > th | dose dependent | sin | 13 | NA |
| 64 | 273.21 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 15 | 9 |
| 77 | 273.60 | radiation | 20.0 | 1440 | > th | dose dependent | rect. | 15 | 18 |
| 83 | 273.72 | humidity | 50.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 85 | 273.75 | humidity | 50.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 89 | 274.07 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 16 | 16 |
| 94 | 274.13 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 13 | 20 |
| 115 | 274.80 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 16 | 11 |
| 122 | 275.01 | humidity | 70.0 | 1440 | < th | dose dependent | rect. | 15 | 16 |
| 123 | 275.02 | humidity | 70.0 | 1440 | < th | dose dependent | rect. | 15 | 5 |
| 145 | 275.20 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 150 | 275.30 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 166 | 275.34 | humidity | 70.0 | 1440 | < th | dose dependent | sin | 14 | NA |
| 173 | 275.56 | radiation | 20.0 | 1440 | > th | dose dependent | sin | 12 | NA |
| 179 | 275.77 | radiation | 1.0 | 270 | > th | dose independent | sin | 19 | NA |
| 186 | 275.84 | temperature | 30.0 | 720 | > th | dose independent | rect. | 17 | 2 |
| 224 | 276.02 | humidity | 70.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 229 | 276.08 | radiation | 20.0 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 233 | 276.17 | wind | 1.0 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 246 | 276.29 | humidity | 70.0 | 270 | > th | dose independent | rect. | 15 | 9 |
| 302 | 276.58 | humidity | 50.0 | 270 | > th | dose independent | rect. | 5 | 19 |
| 305 | 276.61 | humidity | 60.0 | 1440 | > th | dose independent | sin | 15 | NA |
| 338 | 276.87 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 16 | 8 |
| 349 | 277.04 | humidity | 60.0 | 1440 | < th | dose independent | sin | 15 | NA |
| 350 | 277.06 | radiation | 1.0 | 270 | < th | dose dependent | sin | 20 | NA |
| 410 | 277.30 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 12 | 7 |
| 415 | 277.34 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 15 | 12 |
| 421 | 277.38 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 12 | 15 |
| 422 | 277.39 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 12 | 13 |
| 433 | 277.39 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 15 | 10 |
| 440 | 277.40 | radiation | 10.0 | 1440 | > th | dose dependent | rect. | 13 | 20 |
| 452 | 277.49 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 455 | 277.52 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 12 | 20 |
| 511 | 277.76 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 15 | 3 |
| 514 | 277.78 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 515 | 277.79 | radiation | 1.0 | 270 | < th | dose independent | sin | 19 | NA |
| 520 | 277.81 | humidity | 60.0 | 1440 | < th | dose independent | rect. | 12 | 7 |
| 521 | 277.81 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 16 |
| 524 | 277.81 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 16 |
| 530 | 277.87 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 531 | 277.87 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 11 | 21 |
| 533 | 277.89 | radiation | 20.0 | 1440 | < th | dose independent | sin | 13 | NA |
| 540 | 277.92 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 575 | 278.10 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 578 | 278.11 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 586 | 278.14 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 750 | 278.72 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 13 | 20 |
| 797 | 278.86 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 817 | 278.89 | radiation | 30.0 | 1440 | < th | dose dependent | sin | 13 | NA |
| 835 | 278.91 | radiation | 30.0 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 926 | 279.14 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 7 |
| 933 | 279.18 | temperature | 30.0 | 1440 | > th | dose dependent | no | NA | NA |