BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0361000 Os08g0361000|AK070805
(325 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0361000 Conserved hypothetical protein 608 e-174
Os08g0451700 Conserved hypothetical protein 532 e-151
Os08g0451400 AT-rich interaction region domain containing p... 408 e-114
Os08g0451500 Conserved hypothetical protein 323 9e-89
Os09g0434100 Conserved hypothetical protein 203 2e-52
>Os08g0361000 Conserved hypothetical protein
Length = 325
Score = 608 bits (1567), Expect = e-174, Method: Compositional matrix adjust.
Identities = 297/325 (91%), Positives = 297/325 (91%)
Query: 1 GISYIMYWRYSLSSYAASHFRHSLMSVVQSSCSHAWDAFQVAYATFQLYCVRNNEVQRLM 60
GISYIMYWRYSLSSYAASHFRHSLMSVVQSSCSHAWDAFQVAYATFQLYCVRNNEVQRLM
Sbjct: 1 GISYIMYWRYSLSSYAASHFRHSLMSVVQSSCSHAWDAFQVAYATFQLYCVRNNEVQRLM 60
Query: 61 LGPHLLGDAPRIYITPPGNEIAEEEDTSEYFPDIKIYDEDVNLKLLICGAHCTLDSSLLN 120
LGPHLLGDAPRIYITPPGNEIAEEEDTSEYFPDIKIYDEDVNLKLLICGAHCTLDSSLLN
Sbjct: 61 LGPHLLGDAPRIYITPPGNEIAEEEDTSEYFPDIKIYDEDVNLKLLICGAHCTLDSSLLN 120
Query: 121 SLEDGLNALLNIEFRWCKLQDRVSAAPPLHVDSTLLDGMVTICCDIXXXXXXXXXXXXXX 180
SLEDGLNALLNIEFRWCKLQDRVSAAPPLHVDSTLLDGMVTICCDI
Sbjct: 121 SLEDGLNALLNIEFRWCKLQDRVSAAPPLHVDSTLLDGMVTICCDITTSSSSHVSLLLSG 180
Query: 181 XPQTCFDDXXXXXXXXXXXXXSRQLVRVVSVSEDGPSSAEPLTSMSVASGASTFEVLMTL 240
PQTCFDD SRQLVRVVSVSEDGPSSAEPLTSMSVASGASTFEVLMTL
Sbjct: 181 SPQTCFDDKLLEKHIKKELIESRQLVRVVSVSEDGPSSAEPLTSMSVASGASTFEVLMTL 240
Query: 241 PKWAAQVLKYLAQETSYKSLVPLGIASVNGTPVCSFDSQDVDWLLFFRTIQDEAIGTSLY 300
PKWAAQVLKYLAQETSYKSLVPLGIASVNGTPVCSFDSQDVDWLLFFRTIQDEAIGTSLY
Sbjct: 241 PKWAAQVLKYLAQETSYKSLVPLGIASVNGTPVCSFDSQDVDWLLFFRTIQDEAIGTSLY 300
Query: 301 PHPPRWSASLAKNRVKGSMVSKPAR 325
PHPPRWSASLAKNRVKGSMVSKPAR
Sbjct: 301 PHPPRWSASLAKNRVKGSMVSKPAR 325
>Os08g0451700 Conserved hypothetical protein
Length = 464
Score = 532 bits (1371), Expect = e-151, Method: Compositional matrix adjust.
Identities = 267/328 (81%), Positives = 282/328 (85%), Gaps = 3/328 (0%)
Query: 1 GISYIMYWRYSLSSYAASHFRHSLMSVVQSSCSHAWDAFQVAYATFQLYCVRNNEVQRLM 60
GISYIMYWRYSLSSYAASHFRHSL+SVV+SSCSHAWDAFQ+AYA+F+ YCVRNN+VQRLM
Sbjct: 137 GISYIMYWRYSLSSYAASHFRHSLLSVVRSSCSHAWDAFQLAYASFEQYCVRNNDVQRLM 196
Query: 61 LGPHLLGDAPRIYITPPGNEIAEEEDTSEYFPDIKIYDEDVNLKLLICGAHCTLDSSLLN 120
LGPHLLGDAPRIYITPPGN++AEEEDTSEYFPDIKIYDEDV+LKLLICGAHCT DSS+LN
Sbjct: 197 LGPHLLGDAPRIYITPPGNKMAEEEDTSEYFPDIKIYDEDVHLKLLICGAHCTPDSSILN 256
Query: 121 SLEDGLNALLNIEFRWCKLQDRVSAAPPLHVDSTLLDGMVTICCDIXXXXXXXXXXXXXX 180
SLEDGLNALLNIEFRWCKLQDRVSAAPPLHVDS LLDG+VTICCDI
Sbjct: 257 SLEDGLNALLNIEFRWCKLQDRVSAAPPLHVDSALLDGVVTICCDITTSSSSHVSLLLSG 316
Query: 181 XPQTCFDDXXXXXXXXXXXXXSRQLVRVVSVSE-DGPSSAEPLTSMSVASGASTFEVLMT 239
PQTCFDD SR+LVRVVSVSE DGPSSAEPLTSMSVASGASTFEVLMT
Sbjct: 317 SPQTCFDDELLEKHIKKELIESRRLVRVVSVSEDDGPSSAEPLTSMSVASGASTFEVLMT 376
Query: 240 LPKWAAQVLKYLAQETSYKSLVPLGIASVNGTPVCSFDSQDVDWLLFFRTIQ--DEAIGT 297
LPKWAAQVLKYLAQETSYKSLVPLGIASVN TPV SFD +DVD LLFF T Q DEAIG
Sbjct: 377 LPKWAAQVLKYLAQETSYKSLVPLGIASVNDTPVSSFDKEDVDRLLFFCTNQDEDEAIGN 436
Query: 298 SLYPHPPRWSASLAKNRVKGSMVSKPAR 325
LY H PRWSASLAK+RVK + VSKPAR
Sbjct: 437 GLYHHLPRWSASLAKDRVKRNFVSKPAR 464
>Os08g0451400 AT-rich interaction region domain containing protein
Length = 761
Score = 408 bits (1049), Expect = e-114, Method: Compositional matrix adjust.
Identities = 214/324 (66%), Positives = 240/324 (74%), Gaps = 5/324 (1%)
Query: 1 GISYIMYWRYSLSSYAASHFRHSLMSVVQSSCSHAWDAFQVAYATFQLYCVRNNEVQRLM 60
GI Y++YWR S SSYAASHFR +L+SVVQSSCSH WDAFQ+A A+F+LYC RNN+ Q +
Sbjct: 138 GIPYVLYWRNSFSSYAASHFRQALISVVQSSCSHTWDAFQLAQASFRLYCARNNDAQSVK 197
Query: 61 LGPHLLGDAPRIYITPPGNEIAEEEDTSEYFPDIKIYDEDVNLKLLICGAHCTLDSSLLN 120
LGP LLGDAP+I I P NE+ EEE +SE+FP IKIYDEDVN+KLLICGA C LD+SLL
Sbjct: 198 LGPRLLGDAPKINIFLPENEMVEEEGSSEHFPAIKIYDEDVNMKLLICGAPCILDASLLG 257
Query: 121 SLEDGLNALLNIEFRWCKLQDRVSAA-PPLHVDSTLLDGMVTICCDIXXXXXXXXXXXXX 179
SLEDGLNALLNIE R C+LQ+RVSAA PPLH + TL G+VT+ CDI
Sbjct: 258 SLEDGLNALLNIEIRGCRLQNRVSAAPPPLHAE-TLPHGVVTMRCDITTCSSSHVSLLVS 316
Query: 180 XXPQTCFDDXXXXXXXXXXXXXSRQLVRVVSVSE-DGPSSAEPLTSMSVASGASTFEVLM 238
PQTCFDD QLVR V V E D PSS EPLTS+SVASGASTFEV M
Sbjct: 317 GSPQTCFDDKLLENHIKKEIVEKGQLVRAVLVREDDKPSSVEPLTSISVASGASTFEVWM 376
Query: 239 TLPKWAAQVLKYLAQETSYKSLVPLGIASVNGTPVCSFDSQDVDWLLFFRTIQDEAIGTS 298
TLPKWA QVLKYLA E SYKSLVPLGIA VNGTPV SFD QDVD LLFF ++EAI
Sbjct: 377 TLPKWAGQVLKYLAPEISYKSLVPLGIACVNGTPVSSFDRQDVDRLLFF--CKNEAIVNG 434
Query: 299 LYPHPPRWSASLAKNRVKGSMVSK 322
LY H PRWSASL K+R+KG+ SK
Sbjct: 435 LYSHLPRWSASLVKDRLKGTPESK 458
>Os08g0451500 Conserved hypothetical protein
Length = 298
Score = 323 bits (829), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 192/311 (61%), Positives = 211/311 (67%), Gaps = 23/311 (7%)
Query: 22 HSLMSVVQSSCSHAWDAFQVAYATFQLYCV-RNNEVQRLMLGPHLLGDAPRIY---ITPP 77
H+L++ A A Q + FQ + + E+ RL+ G + D P+I+ I PP
Sbjct: 4 HTLINPTVDQFLEAQRALQPRFMYFQGQQLDKEEEIGRLVWGDADVSD-PQIFSSLICPP 62
Query: 78 GNEIAEEEDTSEYFPDIKIYDEDVNLKLLICGAHCTLDSSLLNSLEDGLNALLNIEFRWC 137
FP I +Y E V I + + DSS+LNSLEDGLNALLNIEFRWC
Sbjct: 63 -------------FPTI-VYLE-VPSGEKIAQSLQSKDSSILNSLEDGLNALLNIEFRWC 107
Query: 138 KLQDRVSAAPPLHVDSTLLDGMVTICCDIXXXXXXXXXXXXXXXPQTCFDDXXXXXXXXX 197
KLQDRVSAAPPLHVDSTLLDG+VTICCDI PQTCFDD
Sbjct: 108 KLQDRVSAAPPLHVDSTLLDGVVTICCDITTSSSSHVSLLHSGSPQTCFDDKLLEKHIKK 167
Query: 198 XXXXSRQLVRVVSVSEDG-PSSAEPLTSMSVASGASTFEVLMTLPKWAAQVLKYLAQETS 256
SR+LVRVVSVSED PSSAEPLTSMSVASGASTFEVLMTLPKWAAQVLKYLAQETS
Sbjct: 168 ELIESRRLVRVVSVSEDDRPSSAEPLTSMSVASGASTFEVLMTLPKWAAQVLKYLAQETS 227
Query: 257 YKSLVPLGIASVNGTPVCSFDSQDVDWLLFFRTIQ--DEAIGTSLYPHPPRWSASLAKNR 314
YKSLVPLGIASVNGTPV SFD QDVD LLFF T Q DEAI LY HPPRWSASLAK+R
Sbjct: 228 YKSLVPLGIASVNGTPVSSFDRQDVDRLLFFCTNQDEDEAIANGLYHHPPRWSASLAKDR 287
Query: 315 VKGSMVSKPAR 325
VKG+MVSKPAR
Sbjct: 288 VKGNMVSKPAR 298
>Os09g0434100 Conserved hypothetical protein
Length = 295
Score = 203 bits (516), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 96/138 (69%), Positives = 112/138 (81%), Gaps = 1/138 (0%)
Query: 1 GISYIMYWRYSLSSYAASHFRHSLMSVVQSSCSHAWDAFQVAYATFQLYCVRNNEVQRLM 60
GI Y++YWR S SSYAASHFRH+LMSVVQSS SH WDAFQ+A+A+F+LYCVRNN VQ +
Sbjct: 137 GIPYVIYWRNSFSSYAASHFRHALMSVVQSSVSHTWDAFQLAHASFRLYCVRNNHVQSVK 196
Query: 61 LGPHLLGDAPRIYITPPGNEIAEEEDTSEYFPDIKIYDEDVNLKLLICGAHCTLDSSLLN 120
LGP LLGDAP+I ITPP NE+ EEE +S+ FP IKIYD+D+N+K L+CG T D LL
Sbjct: 197 LGPRLLGDAPKINITPPENEMVEEEGSSDVFPAIKIYDDDINMKFLLCGVPSTPDPCLLG 256
Query: 121 SLEDGLNALLNIEFRWCK 138
SLEDGLNALLNIE W K
Sbjct: 257 SLEDGLNALLNIEV-WNK 273
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.133 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,349,487
Number of extensions: 381510
Number of successful extensions: 772
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 766
Number of HSP's successfully gapped: 5
Length of query: 325
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 224
Effective length of database: 11,762,187
Effective search space: 2634729888
Effective search space used: 2634729888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)