BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0346500 Os08g0346500|015-070-D10
         (175 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0346500  Hypothetical protein                                291   2e-79
Os09g0299200  Homeodomain-like containing protein                  83   9e-17
Os06g0609500  Homeodomain-like containing protein                  70   9e-13
Os05g0491500  Similar to Transfactor-like protein                  64   4e-11

>Os08g0346500 Hypothetical protein
          Length = 175

 Score =  291 bits (744), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 146/175 (83%), Positives = 146/175 (83%)

Query: 1   MAFLPNFLPVCFYLSRNTGLQSTFQTLQLMVGGICILLILLDMSKEEHXXXXXXXXXXXX 60
           MAFLPNFLPVCFYLSRNTGLQSTFQTLQLMVGGICILLILLDMSKEEH            
Sbjct: 1   MAFLPNFLPVCFYLSRNTGLQSTFQTLQLMVGGICILLILLDMSKEEHIYIIISLYLIYI 60

Query: 61  PCVDNKDEDKDPGNLLSALEGSSGMQISEALKLQMEVQKXXXXXXXXXXXXXXXXXAQGK 120
           PCVDNKDEDKDPGNLLSALEGSSGMQISEALKLQMEVQK                 AQGK
Sbjct: 61  PCVDNKDEDKDPGNLLSALEGSSGMQISEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGK 120

Query: 121 YLQKIIEEQQRVIGAGASRATQAQDPSSKNVRCLIQAISLWCSDHQSITLTKLTW 175
           YLQKIIEEQQRVIGAGASRATQAQDPSSKNVRCLIQAISLWCSDHQSITLTKLTW
Sbjct: 121 YLQKIIEEQQRVIGAGASRATQAQDPSSKNVRCLIQAISLWCSDHQSITLTKLTW 175



>Os09g0299200 Homeodomain-like containing protein
          Length = 288

 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 48/81 (59%), Positives = 54/81 (66%), Gaps = 7/81 (8%)

Query: 65  NKDEDKDPGNLLSALEGSSGMQISEALKLQMEVQKXXXXXXXXXXXXXXXXXAQGKYLQK 124
           NK E+KDPG+LL+ LEGSSG+QISEALKLQMEVQK                 AQGKYL+K
Sbjct: 89  NKAENKDPGDLLAGLEGSSGLQISEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKK 148

Query: 125 IIEEQQRVIG-------AGAS 138
           IIEEQQR+ G       AGAS
Sbjct: 149 IIEEQQRLGGVKSETPAAGAS 169



>Os06g0609500 Homeodomain-like containing protein
          Length = 329

 Score = 69.7 bits (169), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 40/75 (53%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 61  PCVDN-KDEDKDPGNLLSALEGSSGMQISEALKLQMEVQKXXXXXXXXXXXXXXXXXAQG 119
           P  D  K + KD G+LL+ +E SSGM+I EALKLQMEVQK                 AQG
Sbjct: 108 PTADGAKSDKKDLGDLLADIESSSGMEIGEALKLQMEVQKRLHEQLEVQRQLQLRIEAQG 167

Query: 120 KYLQKIIEEQQRVIG 134
           +YLQKIIEEQQR+ G
Sbjct: 168 RYLQKIIEEQQRLSG 182



>Os05g0491500 Similar to Transfactor-like protein
          Length = 257

 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/75 (48%), Positives = 45/75 (60%)

Query: 61  PCVDNKDEDKDPGNLLSALEGSSGMQISEALKLQMEVQKXXXXXXXXXXXXXXXXXAQGK 120
           P   +KDE KD  + LS  + + GMQI+EALK+QMEVQK                 AQGK
Sbjct: 107 PAEGSKDEKKDSSDSLSNTDSAPGMQINEALKMQMEVQKRLHEQLEVQRQLQLRIEAQGK 166

Query: 121 YLQKIIEEQQRVIGA 135
           YLQ IIEEQQ++ G+
Sbjct: 167 YLQMIIEEQQKLGGS 181



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.133    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,280,574
Number of extensions: 119666
Number of successful extensions: 252
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 249
Number of HSP's successfully gapped: 4
Length of query: 175
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 81
Effective length of database: 12,127,685
Effective search space: 982342485
Effective search space used: 982342485
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 152 (63.2 bits)