Os08g0346500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os08g0346500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.79 | 0.296 | 7.88 | 1.23 | 0.455 | -0.576 | -0.00467 | 6.85 | 0.144 | 23.5 | 24.69 | 4055 | -- | -- |
| 46.87 | 0.319 | 8.16 | -1.06 | 0.283 | 0.631 | 0.351 | -- | -0.452 | 21.8 | 32.57 | 47520 | -- | -- |
| 39.79 | 0.294 | 7.88 | 1.23 | 0.455 | -0.579 | -- | 6.87 | 0.145 | 23.5 | 24.7 | 4040 | -- | -- |
| 43.63 | 0.308 | 8.13 | -1.07 | 0.427 | 0.674 | -- | -- | -0.431 | 23.7 | 32.74 | 47520 | -- | -- |
| 52.5 | 0.337 | 7.87 | 1.23 | -- | -0.484 | -- | 6.86 | 0.146 | -- | 24.7 | 4086 | -- | -- |
| 54.89 | 0.347 | 8.09 | -0.382 | 0.44 | -- | 0.199 | -- | -0.221 | 23.6 | -- | -- | -- | -- |
| 55.06 | 0.347 | 8.09 | -0.39 | 0.439 | -- | -- | -- | -0.222 | 23.7 | -- | -- | -- | -- |
| 55.1 | 0.346 | 8.13 | -1.08 | -- | 0.693 | -- | -- | -0.438 | -- | 32.65 | 47520 | -- | -- |
| 58.2 | 0.355 | 8.08 | -- | 0.43 | 0.131 | -- | -- | -0.211 | 23.6 | 32.2 | 47520 | -- | -- |
| 67.18 | 0.383 | 8.08 | -0.378 | -- | -- | -- | -- | -0.216 | -- | -- | -- | -- | -- |
| 59.07 | 0.36 | 8.08 | -- | 0.434 | -- | -- | -- | -0.178 | 23.7 | -- | -- | -- | -- |
| 69.82 | 0.389 | 8.08 | -- | -- | 0.149 | -- | -- | -0.212 | -- | 32.1 | 47520 | -- | -- |
| 70.94 | 0.393 | 8.07 | -- | -- | -- | -- | -- | -0.174 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.39 | humidity | 70 | 43200 | < th | dose independent | rect. | 19 | 19 |
| 2 | 39.40 | humidity | 70 | 43200 | < th | dose independent | rect. | 21 | 17 |
| 8 | 39.48 | radiation | 40 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 9 | 39.49 | humidity | 70 | 43200 | < th | dose independent | sin | 5 | NA |
| 10 | 39.49 | radiation | 20 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 14 | 39.56 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 21 | 39.59 | humidity | 70 | 43200 | > th | dose independent | rect. | 19 | 19 |
| 22 | 39.60 | radiation | 20 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 30 | 39.62 | radiation | 1 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 32 | 39.62 | humidity | 80 | 43200 | < th | dose dependent | rect. | 18 | 20 |
| 37 | 39.64 | radiation | 10 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 40 | 39.65 | temperature | 20 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 52 | 39.70 | humidity | 70 | 43200 | > th | dose independent | rect. | 1 | 13 |
| 64 | 39.71 | humidity | 80 | 43200 | < th | dose dependent | rect. | 21 | 17 |
| 76 | 39.73 | wind | 1 | 43200 | < th | dose dependent | rect. | 13 | 13 |
| 81 | 39.74 | humidity | 70 | 43200 | < th | dose independent | rect. | 16 | 22 |
| 91 | 39.76 | humidity | 70 | 43200 | > th | dose independent | sin | 5 | NA |
| 115 | 39.79 | temperature | 25 | 43200 | < th | dose independent | rect. | 6 | 7 |
| 118 | 39.79 | radiation | 10 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 136 | 39.81 | temperature | 25 | 43200 | > th | dose independent | rect. | 6 | 7 |
| 137 | 39.81 | humidity | 70 | 43200 | < th | dose independent | rect. | 6 | 21 |
| 140 | 39.82 | radiation | 20 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 152 | 39.83 | humidity | 70 | 43200 | < th | dose independent | no | NA | NA |
| 163 | 39.83 | humidity | 70 | 43200 | < th | dose independent | rect. | 12 | 23 |
| 164 | 39.83 | humidity | 80 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 187 | 39.85 | humidity | 70 | 43200 | < th | dose independent | rect. | 23 | 23 |
| 247 | 39.90 | temperature | 25 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 255 | 39.90 | humidity | 70 | 43200 | < th | dose independent | rect. | 9 | 23 |
| 283 | 39.93 | temperature | 25 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 312 | 39.94 | humidity | 80 | 43200 | < th | dose dependent | rect. | 18 | 6 |
| 315 | 39.95 | humidity | 70 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 326 | 39.95 | humidity | 70 | 43200 | > th | dose independent | rect. | 6 | 19 |
| 351 | 39.98 | radiation | 20 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 357 | 39.98 | humidity | 80 | 43200 | < th | dose dependent | sin | 5 | NA |
| 394 | 40.00 | temperature | 20 | 43200 | > th | dose dependent | sin | 4 | NA |
| 439 | 40.02 | humidity | 80 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 443 | 40.03 | temperature | 25 | 43200 | < th | dose independent | sin | 3 | NA |
| 464 | 40.04 | radiation | 10 | 43200 | > th | dose independent | sin | 8 | NA |
| 498 | 40.05 | humidity | 70 | 43200 | > th | dose independent | rect. | 12 | 23 |
| 501 | 40.05 | humidity | 80 | 43200 | < th | dose dependent | rect. | 9 | 5 |
| 507 | 40.06 | humidity | 70 | 43200 | > th | dose independent | no | NA | NA |
| 509 | 40.06 | radiation | 10 | 43200 | > th | dose independent | rect. | 6 | 5 |
| 558 | 40.08 | temperature | 25 | 43200 | > th | dose independent | sin | 3 | NA |
| 605 | 40.09 | radiation | 20 | 43200 | < th | dose dependent | rect. | 8 | 7 |
| 698 | 40.13 | temperature | 25 | 43200 | < th | dose independent | rect. | 5 | 18 |
| 717 | 40.14 | humidity | 70 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 722 | 40.14 | temperature | 25 | 43200 | > th | dose independent | rect. | 6 | 17 |
| 859 | 40.17 | temperature | 25 | 43200 | > th | dose independent | rect. | 22 | 18 |