Os06g0609500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os06g0609500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.25 | 0.271 | 9.66 | -1.06 | 0.919 | 1.89 | -0.226 | -1.85 | -0.243 | 10.8 | 20.23 | 758 | -- | -- |
| 35.04 | 0.276 | 9.61 | -0.703 | 0.897 | 1.92 | 0.00771 | -- | -0.139 | 11.1 | 18.03 | 780 | -- | -- |
| 33.43 | 0.269 | 9.65 | -1.03 | 0.914 | 1.88 | -- | -1.67 | -0.233 | 10.8 | 20.16 | 758 | -- | -- |
| 34.41 | 0.273 | 9.63 | -0.769 | 0.889 | 2.19 | -- | -- | -0.143 | 11.7 | 14.99 | 887 | -- | -- |
| 46.86 | 0.321 | 9.64 | -0.74 | -- | 2.19 | -- | -1.19 | -0.146 | -- | 14.8 | 1660 | -- | -- |
| 99.99 | 0.469 | 9.55 | -0.146 | 0.535 | -- | -0.212 | -- | 0.204 | 13 | -- | -- | -- | -- |
| 100.18 | 0.469 | 9.55 | -0.153 | 0.536 | -- | -- | -- | 0.203 | 13 | -- | -- | -- | -- |
| 47.99 | 0.324 | 9.62 | -0.574 | -- | 2.2 | -- | -- | -0.101 | -- | 14.2 | 1660 | -- | -- |
| 46.84 | 0.319 | 9.59 | -- | 0.838 | 1.94 | -- | -- | -0.0243 | 11.1 | 12.51 | 730 | -- | -- |
| 118.04 | 0.508 | 9.56 | -0.174 | -- | -- | -- | -- | 0.193 | -- | -- | -- | -- | -- |
| 100.8 | 0.47 | 9.55 | -- | 0.538 | -- | -- | -- | 0.22 | 13 | -- | -- | -- | -- |
| 56.13 | 0.35 | 9.61 | -- | -- | 2.04 | -- | -- | -0.017 | -- | 14.34 | 4 | -- | -- |
| 118.83 | 0.509 | 9.55 | -- | -- | -- | -- | -- | 0.212 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.37 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 2 | 32.39 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 4 | 32.58 | temperature | 20 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 5 | 32.61 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 22 |
| 7 | 32.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 28 | 33.12 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 40 | 33.37 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 54 | 33.55 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 63 | 33.76 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 76 | 33.89 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 94 | 34.11 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 14 |
| 101 | 34.15 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 117 | 34.27 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 7 |
| 223 | 34.77 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 12 |
| 246 | 34.84 | temperature | 10 | 1440 | > th | dose dependent | sin | 18 | NA |
| 278 | 34.91 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 318 | 34.99 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 7 |
| 690 | 35.68 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 875 | 36.07 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 22 |
| 988 | 36.43 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 6 |