Os05g0491500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transfactor-like protein.
FiT-DB / Search/ Help/ Sample detail
|
Os05g0491500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Transfactor-like protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.06 | 0.2 | 12 | -0.354 | 0.568 | -1.4 | 0.845 | -0.0809 | -0.047 | 22.3 | 15.96 | 644 | -- | -- |
| 18.03 | 0.198 | 12 | -0.361 | 0.557 | -1.4 | 0.817 | -- | -0.0485 | 22 | 16.2 | 587 | -- | -- |
| 20.17 | 0.209 | 12 | -0.294 | 0.54 | -1.39 | -- | 0.47 | -0.0162 | 21.4 | 16.91 | 521 | -- | -- |
| 20.23 | 0.209 | 12 | -0.387 | 0.514 | -1.44 | -- | -- | -0.042 | 21 | 16.34 | 463 | -- | -- |
| 24.02 | 0.228 | 12 | -0.587 | -- | -1.42 | -- | -0.98 | -0.11 | -- | 14.07 | 9 | -- | -- |
| 44.63 | 0.313 | 12 | -0.697 | 0.331 | -- | 0.864 | -- | -0.267 | 0.874 | -- | -- | -- | -- |
| 47.78 | 0.324 | 12 | -0.729 | 0.329 | -- | -- | -- | -0.271 | 0.732 | -- | -- | -- | -- |
| 24.75 | 0.233 | 12 | -0.463 | -- | -1.31 | -- | -- | -0.0739 | -- | 16.34 | 463 | -- | -- |
| 23.72 | 0.227 | 12 | -- | 0.557 | -1.63 | -- | -- | 0.0251 | 20.8 | 15.93 | 472 | -- | -- |
| 54.55 | 0.345 | 12 | -0.717 | -- | -- | -- | -- | -0.265 | -- | -- | -- | -- | -- |
| 61.77 | 0.368 | 12 | -- | 0.318 | -- | -- | -- | -0.19 | 0.626 | -- | -- | -- | -- |
| 30.03 | 0.256 | 12 | -- | -- | -1.55 | -- | -- | -0.00734 | -- | 14.82 | 1664 | -- | -- |
| 68.11 | 0.385 | 12 | -- | -- | -- | -- | -- | -0.186 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.91 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 10 | 17.29 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 19 | 17.55 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 30 | 17.77 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 59 | 18.24 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 65 | 18.28 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 71 | 18.35 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 74 | 18.37 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 21 |
| 80 | 18.41 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 102 | 18.56 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 103 | 18.57 | temperature | 20 | 1440 | > th | dose dependent | sin | 16 | NA |
| 129 | 18.62 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 10 |
| 147 | 18.67 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 8 |
| 156 | 18.69 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 6 |
| 366 | 19.04 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 6 |
| 379 | 19.06 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 22 |
| 407 | 19.11 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 22 |
| 561 | 19.30 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 778 | 19.46 | temperature | 30 | 1440 | < th | dose dependent | sin | 17 | NA |
| 814 | 19.48 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 934 | 19.56 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 966 | 19.59 | temperature | 20 | 1440 | > th | dose dependent | sin | 4 | NA |