BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0328300 Os08g0328300|AK105392
(458 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0328300 ENT domain containing protein 786 0.0
Os09g0279000 ENT domain containing protein 472 e-133
Os04g0659400 ENT domain containing protein 279 3e-75
Os08g0510500 ENT domain containing protein 120 1e-27
>Os08g0328300 ENT domain containing protein
Length = 458
Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/458 (85%), Positives = 390/458 (85%)
Query: 1 MDYNPVDSSGTDDDLPPTYQXXXXXXXXXXXXXXXDIVSAVPYNRTKPQTDMETQIHQLE 60
MDYNPVDSSGTDDDLPPTYQ DIVSAVPYNRTKPQTDMETQIHQLE
Sbjct: 1 MDYNPVDSSGTDDDLPPTYQNRGVRGSGRVSGNGRDIVSAVPYNRTKPQTDMETQIHQLE 60
Query: 61 QDAYCSVLRAFKAQSDAISWEKEGLITELRKELRVSDKEHRELLNRVNGDDIIQRIREWR 120
QDAYCSVLRAFKAQSDAISWEKEGLITELRKELRVSDKEHRELLNRVNGDDIIQRIREWR
Sbjct: 61 QDAYCSVLRAFKAQSDAISWEKEGLITELRKELRVSDKEHRELLNRVNGDDIIQRIREWR 120
Query: 121 ETKGGLQADMVNNAQRSHDRVPSPTTSARKRQKTSQSIXXXXXXXXXXXXHSQTLTAPMQ 180
ETKGGLQADMVNNAQRSHDRVPSPTTSARKRQKTSQSI HSQTLTAPMQ
Sbjct: 121 ETKGGLQADMVNNAQRSHDRVPSPTTSARKRQKTSQSIPSASVPVPSPAVHSQTLTAPMQ 180
Query: 181 PLSSAXXXXXXXXXXXXXXXXXXXXXXXSAIKTMSSAGPSGRGPIMNKNLSGGLPTEPIS 240
PLSSA SAIKTMSSAGPSGRGPIMNKNLSGGLPTEPIS
Sbjct: 181 PLSSATKKVAPPGTKGKKTKPGQKIPGGSAIKTMSSAGPSGRGPIMNKNLSGGLPTEPIS 240
Query: 241 VNPLIGRKVMTRWPDDNSFYEAVITDYDPQLDRYALVYDINTADETWEWVDFKEMAPEDI 300
VNPLIGRKVMTRWPDDNSFYEAVITDYDPQLDRYALVYDINTADETWEWVDFKEMAPEDI
Sbjct: 241 VNPLIGRKVMTRWPDDNSFYEAVITDYDPQLDRYALVYDINTADETWEWVDFKEMAPEDI 300
Query: 301 RWEGGDPGIIQQGRGATVHGGKKXXXXXXXXXXXXXXXXXXQKNTSRKEFPPSQNGVGKK 360
RWEGGDPGIIQQGRGATVHGGKK QKNTSRKEFPPSQNGVGKK
Sbjct: 301 RWEGGDPGIIQQGRGATVHGGKKSSSRNGPMSGPGRGSRGPQKNTSRKEFPPSQNGVGKK 360
Query: 361 SSDCIEILHTESLIKEVERVFSASNPDPLEMEKAKKVLKEHEQSLIDAIARLAEASDGES 420
SSDCIEILHTESLIKEVERVFSASNPDPLEMEKAKKVLKEHEQSLIDAIARLAEASDGES
Sbjct: 361 SSDCIEILHTESLIKEVERVFSASNPDPLEMEKAKKVLKEHEQSLIDAIARLAEASDGES 420
Query: 421 EERAQPLQHNRGWRNHHGGNYANDMTIDGHMVGDADAL 458
EERAQPLQHNRGWRNHHGGNYANDMTIDGHMVGDADAL
Sbjct: 421 EERAQPLQHNRGWRNHHGGNYANDMTIDGHMVGDADAL 458
>Os09g0279000 ENT domain containing protein
Length = 409
Score = 472 bits (1214), Expect = e-133, Method: Compositional matrix adjust.
Identities = 258/419 (61%), Positives = 289/419 (68%), Gaps = 22/419 (5%)
Query: 52 METQIHQLEQDAYCSVLRAFKAQSDAISWEKEGLITELRKELRVSDKEHRELLNRVNGDD 111
M TQIH LEQ+AYCSVLRAFKAQSDAI+WEKEGLITELRKELRVSD +HRELLNRVN DD
Sbjct: 1 MATQIHHLEQEAYCSVLRAFKAQSDAITWEKEGLITELRKELRVSDVDHRELLNRVNSDD 60
Query: 112 IIQRIREWRETKGGLQADMVNNAQRSHDRVPSPTTSARKRQKTSQSIXXXXXXXXXXXXH 171
II+ IREWR + GG QA + NNAQ HD PSPTTS RKRQKTSQS H
Sbjct: 61 IIRSIREWR-SAGGPQAMLPNNAQPMHDLAPSPTTSGRKRQKTSQSFPALPAPPPVM--H 117
Query: 172 SQTLTAPMQPLSSAXXXXXXXXXXXXXXXXXXXXXXXSAIKTM-SSAGPSGRGPIMNKNL 230
SQ L P SS ++K M SSAGPSGRGP MN+N
Sbjct: 118 SQQLALQGPPSSSTAKKGASSGAKGKKTKPGQKVPGGPSVKAMTSSAGPSGRGPHMNRNF 177
Query: 231 SGGL----PTEPISVNPLIGRKVMTRWPDDNSFYEAVITDYDPQLDRYALVYDINTADET 286
GL P+E + +NPLI RKVM+RWP+DNSFYEA ITDY+P+ D YAL YDINTA+E+
Sbjct: 178 PVGLVSFEPSEALHINPLINRKVMSRWPEDNSFYEATITDYNPETDLYALAYDINTANES 237
Query: 287 WEWVDFKEMAPEDIRWEGGDPGIIQQGRGATVHGGKKXXXXXXXXXXXXXXXXXXQKNTS 346
WEWVD K+M PEDIRW+G DPGI Q RGA GGKK K+ S
Sbjct: 238 WEWVDLKQMGPEDIRWQGDDPGIYQGVRGAPGSGGKKSSSRGGPTPGTGRGRGLP-KHVS 296
Query: 347 RKEFPPSQNGVGKKSSDCIEILHTESLIKEVERVFSASNPDPLEMEKAKKVLKEHEQSLI 406
RK+FPPSQNGVGK+SSD I+ILHTESLIKEVERVFS +NPDPLE+EKAKKVLKE EQSLI
Sbjct: 297 RKDFPPSQNGVGKRSSDDIDILHTESLIKEVERVFSINNPDPLEVEKAKKVLKEQEQSLI 356
Query: 407 DAIARLAEASDGESEERAQPLQHNRGWRN------HHGGNYANDMTID-GHMVGDADAL 458
DAIARLAEASDGES+E HNR RN H NYA+ M +D GHM+G ADA+
Sbjct: 357 DAIARLAEASDGESDE------HNRVRRNAPYAGSQHQANYADAMAVDGGHMLGGADAV 409
>Os04g0659400 ENT domain containing protein
Length = 400
Score = 279 bits (714), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 182/426 (42%), Positives = 237/426 (55%), Gaps = 50/426 (11%)
Query: 1 MDYN-PVDSSGTDDDLPPTYQXXXXXXXXXXXXXXXDIVSAVPYNRTKPQTDMETQIHQL 59
M YN P DSSGTDDDLPPT S +P++ +P D+E++IHQ+
Sbjct: 4 MGYNNPYDSSGTDDDLPPTQNRGLRVRSFSANGR----ASVMPFSYIRPHGDLESEIHQV 59
Query: 60 EQDAYCSVLRAFKAQSDAISWEKEGLITELRKELRVSDKEHRELLNRVNGDDIIQRIREW 119
EQ+AY VLRAFK QSDAISWEKE LITELRKELRVSD EHRELLN+VN D I+R+RE+
Sbjct: 60 EQEAYTGVLRAFKVQSDAISWEKESLITELRKELRVSDDEHRELLNKVNEDVAIRRMREF 119
Query: 120 RETKGGLQADMVNNAQRSHDRVPSPTTSARKRQKTSQSIXXXXXXXXXXXXHSQTLTAPM 179
R+ G L A ++ HD P P A KRQ+T SI HS L +P
Sbjct: 120 RQGGGSLSAQH-RGSRIFHDTEPGP---AAKRQRTPLSI----------PSHSAGLQSPA 165
Query: 180 QPLSSAXXXXXXXXXXXXXXXXXXXXXXXSAIKTMSSAGPSGRGPIMNKNLSGGLPT-EP 238
P S S+ K +G G+ N L+ +P+ +P
Sbjct: 166 MPSPSV----------------------PSSTKWGPFSGTKGKKTRTNTPLA--VPSADP 201
Query: 239 ISVNPLIGRKVMTRWPDDNSFYEAVITDYDPQLDRYALVYDINTADETWEWVDFKEMAPE 298
S LI RK+ TRWPDDN+FYEA ITDY+P ++ALVYD+ T +TWE V ++APE
Sbjct: 202 TS---LINRKIYTRWPDDNNFYEATITDYNPATGKHALVYDMGTVAQTWESVRLSDLAPE 258
Query: 299 DIRWEGGDPGIIQQGRGATVHGGKKXXXXXXXXXXXXXXXXXXQKNTSRKEFPPSQNGVG 358
DI W+ D GI + G ++ +N K+ P QNG+
Sbjct: 259 DIIWDLDDQGISNRDGWGPHPGMRRHPGNNGTMAMASRGGGRFSRNEPTKDSAPPQNGIN 318
Query: 359 KKSSDCIEILHTESLIKEVERVFSASNPDPLEMEKAKKVLKEHEQSLIDAIARLAEASDG 418
+ I++ +T S++ EVERV SNP+ E+EKAKK+L++ EQSL+DAIARL +ASD
Sbjct: 319 RNIGH-IDVPNTRSVVIEVERVL--SNPNMGEIEKAKKLLQDQEQSLLDAIARLDDASDS 375
Query: 419 ESEERA 424
ESE+ A
Sbjct: 376 ESEDMA 381
>Os08g0510500 ENT domain containing protein
Length = 272
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 95/162 (58%), Gaps = 25/162 (15%)
Query: 1 MDYNPVDSSGTDDDLPPTYQXXXXXXXXXXXXXXXDIVSAVPYNRTKPQTDMET----QI 56
M Y P+DSSGTDDDLPPTYQ N + PQ ++ + +I
Sbjct: 1 MQYQPLDSSGTDDDLPPTYQPRGPRVIFNG-------------NGSLPQPNLHSNVDREI 47
Query: 57 HQLEQDAYCSVLRAFKAQSDAISWEKEGLITELRKELRVSDKEHRELLNRVNGDDIIQRI 116
Q+EQ AY VLRAFK QSDAI+WEKE LITELRKEL++SDKEHR LL V ++ + RI
Sbjct: 48 RQIEQQAYTGVLRAFKVQSDAITWEKESLITELRKELQISDKEHRVLLKGVTEEEAVCRI 107
Query: 117 REWRETKGGLQADMVNNAQRSHDRVPSPTTSARKRQKTSQSI 158
R+ R+T GG Q+ ++ S P P KRQK S S+
Sbjct: 108 RQSRQT-GGTQS---SSHHSSVVHTPVPA----KRQKKSHSV 141
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.129 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,944,713
Number of extensions: 593110
Number of successful extensions: 1260
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1251
Number of HSP's successfully gapped: 4
Length of query: 458
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 354
Effective length of database: 11,605,545
Effective search space: 4108362930
Effective search space used: 4108362930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 158 (65.5 bits)