BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0324300 Os08g0324300|AK068359
(270 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0324300 Transcriptional factor B3 family protein 515 e-146
Os08g0325100 355 1e-98
Os03g0621600 Transcriptional factor B3 family protein 112 2e-25
Os03g0621800 100 8e-22
Os03g0619850 86 4e-17
Os03g0619825 Transcriptional factor B3 family protein 82 5e-16
Os03g0622100 Transcriptional factor B3 family protein 81 1e-15
Os03g0622200 Transcriptional factor B3 family protein 79 3e-15
Os12g0592300 Transcriptional factor B3 family protein 78 6e-15
Os03g0619600 Transcriptional factor B3 family protein 73 2e-13
Os03g0620400 Transcriptional factor B3 family protein 68 6e-12
Os03g0620500 Transcriptional factor B3 family protein 64 8e-11
>Os08g0324300 Transcriptional factor B3 family protein
Length = 270
Score = 515 bits (1326), Expect = e-146, Method: Compositional matrix adjust.
Identities = 249/270 (92%), Positives = 249/270 (92%)
Query: 1 MGTSCERCRRRDEQDYRNLDDSQKHFLLTMMGDFQHEMIIPKEFVQRLKGDIPGEIQLET 60
MGTSCERCRRRDEQDYRNLDDSQKHFLLTMMGDFQHEMIIPKEFVQRLKGDIPGEIQLET
Sbjct: 1 MGTSCERCRRRDEQDYRNLDDSQKHFLLTMMGDFQHEMIIPKEFVQRLKGDIPGEIQLET 60
Query: 61 RNRNSHTVRVDKTQEKVIFTEGWAQFVKTFDLQMGDSMMFRFNGNSQFDVIIVDQIGREK 120
RNRNSHTVRVDKTQEKVIFTEGWAQFVKTFDLQMGDSMMFRFNGNSQFDVIIVDQIGREK
Sbjct: 61 RNRNSHTVRVDKTQEKVIFTEGWAQFVKTFDLQMGDSMMFRFNGNSQFDVIIVDQIGREK 120
Query: 121 ACSAVVDDSQNPNVQERRVDATETLNSSRAHSQPMPMQSTTETVNHSHARPCPMHTAVDC 180
ACSAVVDDSQNPNVQERRVDATETLNSSRAHSQPMPMQSTTETVNHSHARPCPMHTAVDC
Sbjct: 121 ACSAVVDDSQNPNVQERRVDATETLNSSRAHSQPMPMQSTTETVNHSHARPCPMHTAVDC 180
Query: 181 MPLSHAHPQPMPMQFPTETVNHCHAPTGPMEMPLENVALSHAHARPLQMQSQPTDRLTQV 240
MPLSHAHPQPMPMQFPTETVNHCHAPTGPMEMPLENVALSHAHARPLQMQSQPTDRLTQV
Sbjct: 181 MPLSHAHPQPMPMQFPTETVNHCHAPTGPMEMPLENVALSHAHARPLQMQSQPTDRLTQV 240
Query: 241 QRGXXXXXXXXXXXXXXXXXXXXXIIICIS 270
QRG IIICIS
Sbjct: 241 QRGNSSKGNMTTMSSSSMSSGYNSIIICIS 270
>Os08g0325100
Length = 440
Score = 355 bits (912), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 187/282 (66%), Positives = 202/282 (71%), Gaps = 40/282 (14%)
Query: 1 MGTSCERCRRRDEQDYRNLDDSQKHFLLTMMGDFQHE---------MIIPKEFVQRLKGD 51
MGT CERCRRRDEQDYRNLDD QKHFLL MMGDFQHE + IPKEFVQRLKGD
Sbjct: 1 MGTWCERCRRRDEQDYRNLDDCQKHFLLLMMGDFQHEIRGEQIVEQLTIPKEFVQRLKGD 60
Query: 52 IPGEIQLETRNRNSHTVRVDKTQEKVIFTEGWAQFVKTFDLQMGDSMMFRFNGNSQFDVI 111
IP EIQLET NRNS+TVRVDK+QEKVIF GWAQFVKTFDL MGDSMMFRF GNSQFDVI
Sbjct: 61 IPEEIQLETHNRNSYTVRVDKSQEKVIFAAGWAQFVKTFDLHMGDSMMFRFKGNSQFDVI 120
Query: 112 IVDQIGREKACSAVVDDSQNPNVQERRVD---------------------------ATET 144
I DQ+GREK CS VDD +PNVQE R D ATET
Sbjct: 121 IFDQVGREKVCSVAVDDYLDPNVQEGRTDATETLNSSRAHSQDDYLDPNVQEGRTNATET 180
Query: 145 LNSSRAHSQPMPMQS-TTETVNHS--HARPCPMHT-AVDCMPLSHAHPQPMPMQFPTETV 200
LNSSRAHSQPMPMQ+ TET+N S H++ PM + A + + S AHPQPMPMQ PTETV
Sbjct: 181 LNSSRAHSQPMPMQTPATETLNSSRAHSQDMPMQSPATETLNSSRAHPQPMPMQLPTETV 240
Query: 201 NHCHAPTGPMEMPLENVALSHAHARPLQMQSQPTDRLTQVQR 242
NH HAP PM+MP+EN+ALS A P QMQS PT R TQVQR
Sbjct: 241 NHFHAPHYPMQMPIENMALSRTQAMPTQMQSPPTYRWTQVQR 282
>Os03g0621600 Transcriptional factor B3 family protein
Length = 973
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 94/164 (57%), Gaps = 8/164 (4%)
Query: 3 TSCERCRRRDEQDYRNLDDSQKHFLLTMMGDFQHEMIIPKEFVQRLKGDIPGEIQLETRN 62
+ CERCR R + + DD +F M+G F+ +M IP +F + + I G I+L+ RN
Sbjct: 74 SGCERCRGRG---FWDTDDQDTYFFKVMIGGFRRQMTIPYKFAENFRDQIQGTIKLKARN 130
Query: 63 RNSHTVRVDKTQEKVIFTEGWAQFVKTFDLQMGDSMMFRFNGNSQFDVIIVDQIGREKAC 122
N+ +V VDK K++ T+GWA+F + D++MGD ++FR+ GNSQF+V I D G KA
Sbjct: 131 GNTCSVLVDKCSNKLVLTKGWAEFANSHDIKMGDFLVFRYTGNSQFEVKIFDPSGCVKAA 190
Query: 123 S-AVVDDSQNPNVQERRVDATETLNSSRAHSQPMPMQSTTETVN 165
S V+ Q + Q + D E L+ S H + + TTE N
Sbjct: 191 SHNAVNIGQ--HAQNMQGDPIEILSCSDEHLRAQSL--TTERQN 230
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 63/110 (57%)
Query: 20 DDSQKHFLLTMMGDFQHEMIIPKEFVQRLKGDIPGEIQLETRNRNSHTVRVDKTQEKVIF 79
DD +K+F M+GDF M IP +F + KG I I+LE R+ + V+V K ++
Sbjct: 391 DDQEKYFFKVMIGDFHKRMTIPDKFARHFKGVISKTIKLEPRSGYTFDVQVTKKLNILVL 450
Query: 80 TEGWAQFVKTFDLQMGDSMMFRFNGNSQFDVIIVDQIGREKACSAVVDDS 129
GW FV DL MGD ++F++NG+ V+I D G EK+ S ++++
Sbjct: 451 GSGWESFVNAHDLNMGDFLVFKYNGDFLLQVLIFDPSGCEKSTSCSMENA 500
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Query: 7 RCRRRDEQDYRN-LDDSQKHFLLTMMGDFQHEMIIPKEFVQRLKGDIPGEIQLETRNRNS 65
RCR N +D K+F M+G F+ MIIP EF+Q +G IP I+L+ R+ +
Sbjct: 658 RCREGHAHFNGNHIDGQYKNFFKVMIGRFRERMIIPNEFLQYFRGKIPRTIKLQLRDGCT 717
Query: 66 HTVRVDKTQEKVIFTEGWAQFVKTFDLQMGDSMMFRFNGNSQFDVIIVDQIGREKACS 123
+ V+V K K+ GW FV DLQMGD ++F ++G S+ V+I G EK S
Sbjct: 718 YDVQVTKNLGKISLQSGWKAFVTAHDLQMGDFLVFSYDGISKLKVLIFGPSGCEKVHS 775
>Os03g0621800
Length = 365
Score = 100 bits (250), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 71/130 (54%), Gaps = 3/130 (2%)
Query: 1 MGTSCERCRRRDEQ---DYRNLDDSQKHFLLTMMGDFQHEMIIPKEFVQRLKGDIPGEIQ 57
M S RC + + D+ + KHF M+GDF + IP EF+ G IP I+
Sbjct: 63 MSKSGGRCSKEGDDAYFDWNRTNGEDKHFFKVMLGDFHERVTIPNEFLHNFGGKIPKSIK 122
Query: 58 LETRNRNSHTVRVDKTQEKVIFTEGWAQFVKTFDLQMGDSMMFRFNGNSQFDVIIVDQIG 117
LETR+ + V+V K +V+ GWA +V DL++GD ++F+++G+SQ +I D G
Sbjct: 123 LETRSGLTFDVQVTKNSGRVVLQSGWASYVSAHDLKIGDFLVFKYSGDSQLKTLIFDSSG 182
Query: 118 REKACSAVVD 127
EK C VD
Sbjct: 183 CEKVCEKPVD 192
>Os03g0619850
Length = 253
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 68/135 (50%), Gaps = 9/135 (6%)
Query: 1 MGTSCERCRRRDEQDYRNLDDSQKHFLLTMMGDFQHEMIIPKEFVQRLKGDIPGEIQLET 60
M SC C+R E +L FL+ M D H MIIP FV G IPG I+LE+
Sbjct: 8 MKKSCACCKRYLE----HLGGKMSCFLIRMTTDSMHSMIIPDRFVNHFGGKIPGTIKLES 63
Query: 61 RNRNSHTVRVDKTQEKVIFTEGWAQFVKTFDLQMGDSMMFRFNGNSQFDVIIVDQIGREK 120
N + V V + K + GW FV +++GDS++FR NS F+V+I+D G E
Sbjct: 64 PNGILYVVEVTECMNKTVLQCGWEAFVDAHHIKVGDSLLFRHIENSCFEVMILDSDGSEN 123
Query: 121 AC-----SAVVDDSQ 130
+ V D+SQ
Sbjct: 124 VSLKSNRNGVSDESQ 138
>Os03g0619825 Transcriptional factor B3 family protein
Length = 300
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 77/147 (52%), Gaps = 9/147 (6%)
Query: 4 SCERCRRRDEQDYRNLDDSQKHFLLTMMGDFQHEMIIPKEFVQRLKGDIPGEIQLETRNR 63
SC C+ E +L + FL M D H MI+P FV G IPG I+LE+ N
Sbjct: 11 SCACCKEYLE----HLGGKMRCFLRRMAADSMHSMIMPDRFVSHFGGKIPGTIKLESPNG 66
Query: 64 NSHTVRVDKTQEKVIFTEGWAQFVKTFDLQMGDSMMFRFNGNSQFDVIIVDQIGREK--A 121
+ V V + K + GW FV +++ G+S++FR NS+++V+I+D EK +
Sbjct: 67 ILYVVEVTECMNKTLLQCGWEAFVDAHNIKEGESLLFRHIENSRYEVLILDSDDCEKVFS 126
Query: 122 CSAVVDDSQNPNVQERRVDATETLNSS 148
C+ + + S VQ++ VD ++ SS
Sbjct: 127 CAGIRNGS---CVQDKTVDPVDSSGSS 150
>Os03g0622100 Transcriptional factor B3 family protein
Length = 382
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 69/130 (53%), Gaps = 2/130 (1%)
Query: 1 MGTSCERCRRRDEQDYRN-LDDSQKHFLLTMMGDFQHEMIIPKEFVQRLKGDIPGEIQLE 59
+G +C C+ E Y + + D KHFL M+GDF MI+P F G I + L+
Sbjct: 6 IGKNCSVCKEWQEHCYWSHMADDCKHFLTYMVGDFTESMIVPSRFANNFNGHISEVVNLK 65
Query: 60 TRNRNSHTVRVDKTQE-KVIFTEGWAQFVKTFDLQMGDSMMFRFNGNSQFDVIIVDQIGR 118
+ + + ++ V + +++ GW +FV +Q D ++FR++G S FDV+I D G
Sbjct: 66 SPSGKTWSIGVAYSDTGELVLRSGWKEFVDANGVQENDCLLFRYSGVSSFDVLIFDPSGC 125
Query: 119 EKACSAVVDD 128
EKA V++
Sbjct: 126 EKASPHFVEN 135
>Os03g0622200 Transcriptional factor B3 family protein
Length = 378
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 67/124 (54%), Gaps = 3/124 (2%)
Query: 1 MGTSCERCRRRDEQDYRN-LDDSQKHFLLTMMGDFQHEMIIPKEFVQRLKGDIPGEIQLE 59
+G +C C+ E Y + + D KHFL M+GDF M +P F G I E+ L
Sbjct: 6 IGKNCSVCKEWQEHCYWSHMADHSKHFLKHMVGDFTESMTVPARFANNFNGHISEEVNLR 65
Query: 60 TRNRNSHTVRVDKTQE-KVIFTEGWAQFVKTFDLQMGDSMMFRFNG-NSQFDVIIVDQIG 117
+ + + ++ V + +++ GW +FV ++ GD ++FR++G +S FDV+I D G
Sbjct: 66 SPSGETWSIGVANSDAGELVLQPGWKEFVDGNGIEEGDCLLFRYSGVSSSFDVLIFDPSG 125
Query: 118 REKA 121
EKA
Sbjct: 126 CEKA 129
>Os12g0592300 Transcriptional factor B3 family protein
Length = 366
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 61/123 (49%), Gaps = 5/123 (4%)
Query: 4 SCERCRRRDEQDYR-NLDDSQKHFLLTMMGDFQHEMIIPKEFVQRLKGDIPGEIQLETRN 62
CE CR E YR ++D S+ F M GDF H + IP++ R G I L+ +
Sbjct: 5 GCESCREWQEHCYREHMDVSRIRFFRLMTGDFAHGISIPEKVADRFSGQITKGFNLKAPS 64
Query: 63 RNSHTVRVDKTQEKVIFTEGWAQFVKTFDLQMGDSMMF----RFNGNSQFDVIIVDQIGR 118
+ V V+K +++I GW F K +LQ D + F R NG+ FDV+I D G
Sbjct: 65 GETWRVSVEKVADELILMSGWEDFAKAHELQENDLLFFTCNGRCNGSFSFDVLIFDASGC 124
Query: 119 EKA 121
EK
Sbjct: 125 EKV 127
>Os03g0619600 Transcriptional factor B3 family protein
Length = 536
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 4/137 (2%)
Query: 1 MGTSCERCRRRDEQDYRNLDDSQKHFLLTMMGDFQHEMIIPKEFVQRLKGDIPGEIQLET 60
M SC C++ E +LD F+ M D + MI+P +FV GD G I+L++
Sbjct: 8 MKKSCVCCQKYLE----HLDGKMNCFVRRMTADSRRSMIMPCKFVNHFGGDFSGTIKLQS 63
Query: 61 RNRNSHTVRVDKTQEKVIFTEGWAQFVKTFDLQMGDSMMFRFNGNSQFDVIIVDQIGREK 120
N + V V K + K + GW FV ++ DS++FR NS+F+V+I D EK
Sbjct: 64 PNGILYVVEVTKCKNKTVLRCGWEAFVDAHHIEENDSLLFRCVENSRFEVLIFDSDDCEK 123
Query: 121 ACSAVVDDSQNPNVQER 137
S + ++QE+
Sbjct: 124 VFSCAGIRNTCKSIQEK 140
>Os03g0620400 Transcriptional factor B3 family protein
Length = 519
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 9/136 (6%)
Query: 4 SCERCRRRDEQDYRNLDDSQKHFLLTMMGDFQHEMIIPKEFVQRLKGDIPGEIQLETRNR 63
SC+ +R + +L+ K F L M +F H M IP +F+ G + I+L +
Sbjct: 11 SCDWSKRYVD----HLNGKMKCFHLQMSANFGHSMTIPNKFLDHFGGTLSRTIELVSPKG 66
Query: 64 NSHTVRVDKTQEKVIFTEGWAQFVKTFDLQMGDSMMFRFNGNSQFDVIIVDQIGREKA-- 121
+ V+V + K I GW FV ++ DS++FR NS+F+V+I+D G EK
Sbjct: 67 IVYIVKVTEHMNKTILQCGWEAFVDAHHIEENDSLLFRHIENSRFEVLILDSDGCEKVFT 126
Query: 122 CSAVVDDSQNPNVQER 137
C+ + + +VQER
Sbjct: 127 CAGI---KKTSSVQER 139
>Os03g0620500 Transcriptional factor B3 family protein
Length = 111
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 1 MGTSCERCRRRDEQDYRNLDDSQKHFLLTMMGDFQHEMIIPKEFVQRLKGDIPGEIQLET 60
M C+ C+R + + K F M +F+H MIIP +F+ + G I ++LE+
Sbjct: 8 MKKYCDCCKRYVDHS----NGKMKCFHRQMSANFEHSMIIPNKFLDQFGGKISRTVELES 63
Query: 61 RNRNSHTVRVDKTQEKVIFTEGWAQFVKTFDLQMGDSMMFRFNGNSQF 108
N + V+V K K + GW FV ++ DS++FR NS+F
Sbjct: 64 PKGNVYVVKVSKHMNKTVLQCGWEAFVDAHQIEENDSLLFRHIKNSRF 111
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.131 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,532,113
Number of extensions: 367121
Number of successful extensions: 1235
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 1207
Number of HSP's successfully gapped: 14
Length of query: 270
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 171
Effective length of database: 11,866,615
Effective search space: 2029191165
Effective search space used: 2029191165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)