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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0621600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transcriptional factor B3 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.31 (0.0224) R2 : 1.5e-07
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00039 (0.0472) R2dN8 : 1.94e-07 R2N8 : 1.5e-07
σ : 0.422
deviance : 81.66
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
75.76 0.409 3.28 0.298 0.349 0.198 -1.61 -1.72 0.0553 11 0.04071 97 -- --
78.68 0.416 3.3 0.16 0.131 -0.114 -0.49 -- 0.0165 4.82 10.15 252 -- --
77.53 0.41 3.29 0.238 0.303 0.162 -- -0.501 0.0534 10.9 0.03999 151 -- --
79.01 0.414 3.29 0.225 0.3 0.16 -- -- 0.041 11.1 0.1535 159 -- --
79.82 0.416 3.3 0.195 -- 0.0404 -- -0.571 0.0431 -- 11.54 330 -- --
79.24 0.417 3.3 0.172 0.167 -- 0.0689 -- 0.0178 8.94 -- -- -- --
79.25 0.417 3.3 0.174 0.168 -- -- -- 0.0175 8.68 -- -- -- --
78.88 0.414 3.28 0.174 -- 0.254 -- -- 0.0639 -- 0.18 1026 -- --
79.9 0.419 3.3 -- 0.241 0.0769 -- -- -0.00247 9.63 0.16 159 -- --
80.85 0.42 3.3 0.174 -- -- -- -- 0.019 -- -- -- -- --
80.05 0.419 3.3 -- 0.169 -- -- -- -0.00184 8.6 -- -- -- --
80.03 0.417 3.29 -- -- 0.282 -- -- 0.0692 -- 0.17 1047 -- --
81.66 0.422 3.31 -- -- -- -- -- -0.00039 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 67.70 wind 7.0 90 > th dose independent rect. 1 8
2 67.73 wind 7.0 90 > th dose dependent rect. 1 8
6 67.82 wind 7.0 90 > th dose independent rect. 8 1
7 67.82 wind 7.0 90 > th dose dependent rect. 8 1
49 71.52 radiation 20.0 270 > th dose dependent rect. 6 1
68 71.76 radiation 20.0 270 > th dose independent rect. 6 1
84 71.96 radiation 40.0 90 > th dose dependent rect. 8 1
105 72.51 temperature 25.0 10 < th dose dependent rect. 8 2
115 72.62 atmosphere 1005.0 90 > th dose dependent rect. 2 1
117 72.63 atmosphere 1005.0 10 > th dose dependent rect. 2 2
121 72.73 atmosphere 1010.0 30 < th dose dependent rect. 2 1
125 72.79 atmosphere 995.0 10 > th dose independent rect. 3 23
132 72.87 temperature 15.0 10 > th dose independent rect. 3 23
134 72.94 wind 3.0 10 < th dose independent rect. 2 1
135 72.96 wind 5.0 10 < th dose dependent rect. 2 1
137 72.96 temperature 25.0 10 < th dose dependent rect. 10 1
148 73.00 temperature 25.0 10 < th dose independent rect. 2 1
151 73.01 temperature 10.0 10 > th dose independent rect. 2 1
154 73.01 humidity 50.0 10 > th dose independent rect. 2 1
157 73.01 atmosphere 995.0 10 > th dose independent rect. 2 1
158 73.01 atmosphere 1010.0 10 < th dose independent rect. 2 1
160 73.01 radiation 1.0 10 < th dose independent rect. 2 1
165 73.01 precipitation 0.1 10 < th dose independent rect. 2 1
167 73.01 radiation 1.0 10 < th dose dependent rect. 2 1
172 73.01 precipitation 0.1 10 < th dose dependent rect. 2 1
173 73.03 temperature 30.0 10 < th dose dependent rect. 2 1
175 73.04 humidity 50.0 10 > th dose dependent rect. 2 1
176 73.05 temperature 10.0 10 > th dose dependent rect. 2 1
230 73.16 wind 1.0 30 > th dose independent rect. 2 1
236 73.20 atmosphere 995.0 10 > th dose dependent rect. 2 1
248 73.29 temperature 25.0 90 > th dose independent rect. 1 3
253 73.34 temperature 25.0 90 > th dose dependent rect. 1 3
256 73.36 wind 9.0 30 < th dose independent rect. 3 23
270 73.55 radiation 1.0 43200 < th dose dependent rect. 3 1
298 73.81 precipitation 0.1 30 < th dose independent rect. 3 23
300 73.81 precipitation 0.1 30 < th dose dependent rect. 3 23
332 74.08 temperature 20.0 270 < th dose independent rect. 5 2
363 74.25 wind 9.0 1440 < th dose independent rect. 3 1
364 74.25 temperature 10.0 1440 > th dose independent rect. 3 1
367 74.25 temperature 30.0 1440 < th dose independent rect. 3 1
371 74.25 humidity 50.0 1440 > th dose independent rect. 3 1
380 74.25 atmosphere 995.0 1440 > th dose independent rect. 3 1
381 74.25 radiation 1.0 1440 < th dose independent rect. 3 1
402 74.25 temperature 10.0 1440 > th dose independent rect. 4 23
421 74.31 humidity 90.0 720 < th dose independent rect. 1 3
426 74.33 temperature 25.0 720 > th dose dependent rect. 3 5
441 74.40 radiation 40.0 10 < th dose dependent rect. 14 12
450 74.44 humidity 90.0 720 < th dose independent rect. 2 1
459 74.50 humidity 80.0 30 < th dose independent rect. 9 1
460 74.50 humidity 80.0 90 < th dose independent rect. 7 3
461 74.51 radiation 10.0 10 < th dose independent rect. 14 12
462 74.52 humidity 80.0 90 < th dose independent rect. 5 5
482 74.61 temperature 25.0 270 < th dose dependent rect. 5 2
485 74.63 humidity 90.0 90 < th dose independent rect. 2 1
486 74.63 humidity 90.0 90 < th dose independent rect. 1 4
494 74.67 radiation 20.0 90 > th dose independent rect. 8 1
497 74.68 wind 9.0 30 < th dose dependent rect. 3 23
514 74.69 radiation 30.0 10 < th dose independent rect. 15 11
533 74.74 radiation 20.0 90 > th dose independent rect. 6 4
565 74.79 humidity 80.0 90 < th dose independent rect. 1 9
566 74.79 atmosphere 1000.0 10 > th dose independent rect. 16 10
568 74.79 humidity 50.0 30 > th dose independent rect. 3 23
570 74.79 humidity 90.0 30 < th dose dependent rect. 5 5
572 74.79 humidity 90.0 30 < th dose dependent rect. 1 9
573 74.80 humidity 90.0 30 < th dose dependent rect. 7 3
584 74.83 humidity 80.0 90 < th dose independent rect. 23 11
588 74.85 humidity 90.0 720 > th dose independent rect. 2 2
606 74.89 temperature 25.0 720 > th dose independent rect. 3 6
608 74.89 humidity 80.0 90 < th dose independent rect. 21 13
627 74.94 humidity 80.0 14400 < th dose dependent rect. 2 7
635 74.95 temperature 10.0 30 > th dose dependent rect. 3 23
691 75.09 wind 5.0 90 < th dose independent rect. 3 10
692 75.09 humidity 60.0 10 > th dose independent rect. 14 12
693 75.09 humidity 90.0 30 < th dose dependent rect. 9 1
714 75.13 radiation 10.0 10 < th dose independent rect. 12 14
735 75.18 humidity 80.0 720 > th dose dependent rect. 3 1
748 75.21 wind 9.0 30 < th dose dependent rect. 3 11
754 75.22 wind 9.0 10 < th dose independent rect. 16 10
757 75.23 temperature 10.0 10 > th dose independent rect. 16 10
759 75.23 temperature 10.0 10 > th dose independent rect. 2 14
761 75.23 atmosphere 1015.0 10 < th dose independent rect. 2 14
762 75.23 humidity 80.0 14400 < th dose dependent rect. 7 1
768 75.24 precipitation 0.1 10 < th dose independent rect. 2 14
772 75.24 precipitation 0.1 10 < th dose dependent rect. 2 14
795 75.26 atmosphere 995.0 10 > th dose independent rect. 2 14
814 75.28 precipitation 0.1 10 < th dose independent rect. 16 10
821 75.28 precipitation 0.1 10 < th dose dependent rect. 16 10
829 75.30 radiation 20.0 90 > th dose independent rect. 14 20
842 75.32 wind 9.0 720 < th dose dependent rect. 2 1
856 75.34 temperature 25.0 30 > th dose dependent rect. 16 19
857 75.35 wind 5.0 14400 < th dose independent rect. 9 6
858 75.35 wind 5.0 14400 < th dose independent rect. 9 8
886 75.37 wind 5.0 14400 > th dose independent rect. 9 8
888 75.37 humidity 50.0 10 > th dose independent rect. 2 14
900 75.39 humidity 90.0 720 < th dose independent rect. 24 10
902 75.39 temperature 10.0 10 > th dose independent rect. 2 12
904 75.39 temperature 10.0 10 > th dose independent rect. 14 12
905 75.39 atmosphere 995.0 10 > th dose independent rect. 2 12
906 75.39 atmosphere 1015.0 10 < th dose independent rect. 2 12
908 75.40 wind 5.0 14400 < th dose independent rect. 11 1
918 75.41 wind 1.0 720 > th dose independent rect. 14 1
937 75.42 wind 5.0 14400 > th dose independent rect. 9 6
942 75.42 temperature 30.0 90 < th dose independent rect. 1 14
957 75.43 wind 9.0 10 < th dose independent rect. 14 12
964 75.43 temperature 25.0 10 < th dose dependent rect. 6 5
981 75.45 temperature 10.0 1440 > th dose independent rect. 17 10
984 75.45 radiation 30.0 1440 < th dose independent rect. 17 10
990 75.45 temperature 10.0 1440 > th dose independent rect. 3 14