BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0300100 Os08g0300100|AK070196
(50 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0300100 Conserved hypothetical protein 107 2e-24
Os07g0199500 97 3e-21
Os08g0282300 88 1e-18
Os08g0522100 Protein of unknown function DUF889, eukaryote ... 86 5e-18
Os05g0133500 86 6e-18
Os08g0448900 Protein of unknown function DUF889, eukaryote ... 86 7e-18
Os06g0491100 84 3e-17
Os04g0353200 Conserved hypothetical protein 82 6e-17
Os10g0198500 82 7e-17
Os11g0662100 82 1e-16
>Os08g0300100 Conserved hypothetical protein
Length = 50
Score = 107 bits (268), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/50 (100%), Positives = 50/50 (100%)
Query: 1 MAFKCRCIAPNEAAWRLLQFEIHYTDPAIERLHVHMPLENNVTFTEDDNL 50
MAFKCRCIAPNEAAWRLLQFEIHYTDPAIERLHVHMPLENNVTFTEDDNL
Sbjct: 1 MAFKCRCIAPNEAAWRLLQFEIHYTDPAIERLHVHMPLENNVTFTEDDNL 50
>Os07g0199500
Length = 222
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 43/48 (89%), Positives = 46/48 (95%)
Query: 3 FKCRCIAPNEAAWRLLQFEIHYTDPAIERLHVHMPLENNVTFTEDDNL 50
+CRCIAPNEAAWRLLQF+IHYTDPAIERLHVHMPLEN+VTF EDDNL
Sbjct: 174 LECRCIAPNEAAWRLLQFKIHYTDPAIERLHVHMPLENSVTFIEDDNL 221
>Os08g0282300
Length = 1415
Score = 87.8 bits (216), Expect = 1e-18, Method: Composition-based stats.
Identities = 34/48 (70%), Positives = 43/48 (89%)
Query: 3 FKCRCIAPNEAAWRLLQFEIHYTDPAIERLHVHMPLENNVTFTEDDNL 50
+CRC+ PN+AAW+LLQF+IH+TDP+IERL VH+P ENNV FTEDD+L
Sbjct: 211 LECRCVTPNDAAWQLLQFDIHHTDPSIERLPVHLPFENNVVFTEDDDL 258
>Os08g0522100 Protein of unknown function DUF889, eukaryote family protein
Length = 1578
Score = 86.3 bits (212), Expect = 5e-18, Method: Composition-based stats.
Identities = 33/48 (68%), Positives = 43/48 (89%)
Query: 3 FKCRCIAPNEAAWRLLQFEIHYTDPAIERLHVHMPLENNVTFTEDDNL 50
+CRC+ PN+ AWRLLQF+IH+TDP++ERL VH+PLENNV +TEDD+L
Sbjct: 347 LECRCVTPNDVAWRLLQFDIHHTDPSVERLPVHLPLENNVVYTEDDDL 394
>Os05g0133500
Length = 738
Score = 85.9 bits (211), Expect = 6e-18, Method: Composition-based stats.
Identities = 34/48 (70%), Positives = 42/48 (87%)
Query: 3 FKCRCIAPNEAAWRLLQFEIHYTDPAIERLHVHMPLENNVTFTEDDNL 50
+CRC+ PN+AAWRL QF+IH+TDP++ERL VH+P ENNV FTEDDNL
Sbjct: 565 LECRCVTPNDAAWRLQQFDIHHTDPSVERLLVHLPFENNVIFTEDDNL 612
>Os08g0448900 Protein of unknown function DUF889, eukaryote family protein
Length = 1740
Score = 85.5 bits (210), Expect = 7e-18, Method: Composition-based stats.
Identities = 33/48 (68%), Positives = 42/48 (87%)
Query: 3 FKCRCIAPNEAAWRLLQFEIHYTDPAIERLHVHMPLENNVTFTEDDNL 50
+CRC+ PN+AAWRL QF+IH+TDP+IERL VH+P +NNV FTEDD+L
Sbjct: 613 LECRCVTPNDAAWRLQQFDIHHTDPSIERLPVHLPFKNNVVFTEDDDL 660
>Os06g0491100
Length = 1203
Score = 83.6 bits (205), Expect = 3e-17, Method: Composition-based stats.
Identities = 32/48 (66%), Positives = 42/48 (87%)
Query: 3 FKCRCIAPNEAAWRLLQFEIHYTDPAIERLHVHMPLENNVTFTEDDNL 50
+CRC++PN+AAWRL QF+IH+TDP++ERL V +P ENNV FTEDD+L
Sbjct: 205 LECRCVSPNDAAWRLQQFDIHHTDPSVERLPVQLPFENNVIFTEDDDL 252
>Os04g0353200 Conserved hypothetical protein
Length = 303
Score = 82.4 bits (202), Expect = 6e-17, Method: Composition-based stats.
Identities = 33/48 (68%), Positives = 43/48 (89%)
Query: 3 FKCRCIAPNEAAWRLLQFEIHYTDPAIERLHVHMPLENNVTFTEDDNL 50
+CRCIAPN+AAWRLLQFEIH+T+P++ERL VH+PL N+V + EDD+L
Sbjct: 179 LECRCIAPNDAAWRLLQFEIHHTNPSVERLPVHLPLGNSVVYNEDDSL 226
>Os10g0198500
Length = 572
Score = 82.4 bits (202), Expect = 7e-17, Method: Composition-based stats.
Identities = 33/46 (71%), Positives = 42/46 (91%)
Query: 5 CRCIAPNEAAWRLLQFEIHYTDPAIERLHVHMPLENNVTFTEDDNL 50
CRC+ P EAAWRLLQF+IH+TDP++ERL VH+PLEN+V F+EDD+L
Sbjct: 286 CRCVTPCEAAWRLLQFDIHHTDPSMERLPVHLPLENSVVFSEDDHL 331
>Os11g0662100
Length = 2021
Score = 81.6 bits (200), Expect = 1e-16, Method: Composition-based stats.
Identities = 31/48 (64%), Positives = 42/48 (87%)
Query: 3 FKCRCIAPNEAAWRLLQFEIHYTDPAIERLHVHMPLENNVTFTEDDNL 50
+C+C+ PN+AAW LLQF+IH+TDP++ERL VH+PLENNV + EDD+L
Sbjct: 678 LECQCVTPNDAAWHLLQFDIHHTDPSVERLPVHLPLENNVVYIEDDDL 725
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.137 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,865,642
Number of extensions: 48304
Number of successful extensions: 141
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 10
Length of query: 50
Length of database: 17,035,801
Length adjustment: 23
Effective length of query: 27
Effective length of database: 15,834,879
Effective search space: 427541733
Effective search space used: 427541733
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)