Os04g0353200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0353200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.92 | 0.325 | 8.56 | 0.58 | 0.76 | -0.987 | -0.915 | 1.13 | 0.463 | 7.76 | 21.39 | 79 | -- | -- |
| 49.04 | 0.326 | 8.58 | 0.423 | 0.777 | -0.904 | -0.779 | -- | 0.416 | 7.52 | 19.78 | 92 | -- | -- |
| 50.12 | 0.33 | 8.56 | 0.57 | 0.747 | -0.952 | -- | 1.35 | 0.458 | 7.52 | 21.87 | 107 | -- | -- |
| 51.11 | 0.333 | 8.58 | 0.352 | 0.784 | -0.861 | -- | -- | 0.398 | 7.44 | 19.96 | 84 | -- | -- |
| 64.69 | 0.375 | 8.57 | 0.615 | -- | -1.37 | -- | 1.81 | 0.466 | -- | 23.84 | 397 | -- | -- |
| 61.94 | 0.369 | 8.62 | 0.168 | 0.971 | -- | -0.577 | -- | 0.248 | 6.36 | -- | -- | -- | -- |
| 62.74 | 0.371 | 8.61 | 0.16 | 0.969 | -- | -- | -- | 0.25 | 6.27 | -- | -- | -- | -- |
| 69.07 | 0.387 | 8.6 | 0.397 | -- | -1.21 | -- | -- | 0.406 | -- | 23.78 | 373 | -- | -- |
| 53.99 | 0.342 | 8.6 | -- | 0.797 | -0.716 | -- | -- | 0.341 | 7.24 | 21.8 | 78 | -- | -- |
| 111.47 | 0.493 | 8.63 | 0.186 | -- | -- | -- | -- | 0.271 | -- | -- | -- | -- | -- |
| 63.41 | 0.372 | 8.62 | -- | 0.971 | -- | -- | -- | 0.232 | 6.26 | -- | -- | -- | -- |
| 73.2 | 0.398 | 8.61 | -- | -- | -1.17 | -- | -- | 0.356 | -- | 24 | 362 | -- | -- |
| 112.38 | 0.495 | 8.64 | -- | -- | -- | -- | -- | 0.25 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.52 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 2 | 47.60 | temperature | 20 | 90 | > th | dose dependent | rect. | 24 | 23 |
| 5 | 48.16 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 9 | 48.28 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 10 | 48.31 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 23 | 48.63 | temperature | 20 | 90 | > th | dose dependent | rect. | 22 | 23 |
| 36 | 48.77 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 51 | 49.06 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 69 | 49.23 | temperature | 20 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 91 | 49.39 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 102 | 49.51 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 104 | 49.53 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 106 | 49.56 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 111 | 49.59 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 117 | 49.64 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 138 | 49.75 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 149 | 49.81 | temperature | 15 | 90 | > th | dose dependent | sin | 20 | NA |
| 158 | 49.83 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 216 | 50.08 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 21 |
| 255 | 50.20 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 15 |
| 375 | 50.48 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 388 | 50.51 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 21 |
| 444 | 50.60 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 16 |
| 459 | 50.62 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 18 |
| 464 | 50.63 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 15 | 3 |
| 482 | 50.66 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 514 | 50.71 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 14 | 5 |
| 515 | 50.71 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 14 | 5 |
| 537 | 50.73 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 15 | 2 |
| 594 | 50.80 | humidity | 80 | 43200 | < th | dose dependent | rect. | 20 | 4 |
| 605 | 50.81 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 644 | 50.85 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 14 |
| 715 | 50.93 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 21 |
| 719 | 50.94 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 4 |
| 745 | 50.97 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 746 | 50.97 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 12 |
| 817 | 51.03 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 818 | 51.04 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 828 | 51.05 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 829 | 51.05 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 844 | 51.06 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 873 | 51.08 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 874 | 51.08 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 6 |
| 880 | 51.09 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 894 | 51.10 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 9 |
| 911 | 51.11 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 912 | 51.11 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 947 | 51.13 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 12 |
| 957 | 51.13 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 973 | 51.15 | temperature | 25 | 1440 | > th | dose dependent | sin | 16 | NA |