Os08g0300100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0300100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.99 | 0.339 | 10.1 | -1.29 | 0.647 | -0.507 | -0.211 | -0.542 | -0.63 | 23.7 | 0.1908 | 1317 | -- | -- |
| 52.05 | 0.336 | 10.1 | -1.29 | 0.65 | -0.621 | -0.195 | -- | -0.634 | 23.7 | 0.0001455 | 1299 | -- | -- |
| 52.18 | 0.336 | 10.1 | -1.29 | 0.648 | -0.501 | -- | -0.564 | -0.629 | 23.7 | 0.3043 | 1319 | -- | -- |
| 52.16 | 0.336 | 10.1 | -1.31 | 0.651 | -0.695 | -- | -- | -0.629 | 23.7 | 0.0004234 | 945 | -- | -- |
| 78.54 | 0.413 | 10.1 | -1.27 | -- | -0.432 | -- | -0.852 | -0.621 | -- | 0.4494 | 1308 | -- | -- |
| 55.85 | 0.35 | 10.1 | -1.41 | 0.648 | -- | -0.217 | -- | -0.605 | 23.7 | -- | -- | -- | -- |
| 56.06 | 0.351 | 10.1 | -1.4 | 0.649 | -- | -- | -- | -0.605 | 23.7 | -- | -- | -- | -- |
| 78.65 | 0.413 | 10.1 | -1.26 | -- | -0.664 | -- | -- | -0.625 | -- | 0.2567 | 1299 | -- | -- |
| 89.02 | 0.439 | 10.1 | -- | 0.653 | -1.21 | -- | -- | -0.544 | 23.5 | 0.3929 | 1724 | -- | -- |
| 82.54 | 0.425 | 10.1 | -1.38 | -- | -- | -- | -- | -0.597 | -- | -- | -- | -- | -- |
| 107.51 | 0.485 | 10 | -- | 0.633 | -- | -- | -- | -0.449 | 23.6 | -- | -- | -- | -- |
| 115.74 | 0.501 | 10 | -- | -- | -1.16 | -- | -- | -0.532 | -- | 0.4804 | 1724 | -- | -- |
| 132.68 | 0.538 | 10 | -- | -- | -- | -- | -- | -0.444 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.15 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 2 | 50.21 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 4 | 50.26 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 6 |
| 8 | 50.27 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 6 |
| 16 | 50.31 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 22 | 18 |
| 20 | 50.32 | wind | 7.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 24 | 50.33 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 6 |
| 38 | 50.36 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 42 | 50.36 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 45 | 50.37 | wind | 7.0 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 51 | 50.38 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 55 | 50.39 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 23 | 17 |
| 67 | 50.41 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 70 | 50.41 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 18 | 22 |
| 83 | 50.43 | wind | 7.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 99 | 50.47 | wind | 5.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 121 | 50.52 | wind | 5.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 130 | 50.54 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 134 | 50.54 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 13 | 12 |
| 164 | 50.60 | wind | 9.0 | 43200 | < th | dose independent | rect. | 17 | 10 |
| 167 | 50.60 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 16 | 12 |
| 172 | 50.61 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 176 | 50.62 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 179 | 50.62 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 13 | 9 |
| 180 | 50.62 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 12 | 10 |
| 188 | 50.63 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 226 | 50.70 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 227 | 50.70 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 13 | 6 |
| 231 | 50.71 | atmosphere | 995.0 | 43200 | > th | dose independent | sin | 3 | NA |
| 242 | 50.72 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 252 | 50.73 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 13 | 6 |
| 262 | 50.73 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 16 | 15 |
| 284 | 50.76 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 11 | 12 |
| 305 | 50.79 | atmosphere | 995.0 | 43200 | > th | dose independent | sin | 20 | NA |
| 332 | 50.81 | wind | 5.0 | 43200 | > th | dose independent | rect. | 17 | 17 |
| 378 | 50.86 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 19 | NA |
| 386 | 50.86 | wind | 5.0 | 43200 | < th | dose independent | rect. | 17 | 17 |
| 392 | 50.87 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 3 | NA |
| 393 | 50.87 | wind | 9.0 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 401 | 50.88 | wind | 5.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 423 | 50.89 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 17 | 16 |
| 435 | 50.90 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 7 | 21 |
| 451 | 50.91 | atmosphere | 995.0 | 43200 | < th | dose independent | no | NA | NA |
| 485 | 50.92 | wind | 5.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 638 | 51.00 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 690 | 51.03 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 703 | 51.04 | atmosphere | 1000.0 | 43200 | < th | dose dependent | sin | 0 | NA |
| 780 | 51.10 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 17 | 14 |
| 794 | 51.11 | atmosphere | 995.0 | 43200 | > th | dose independent | no | NA | NA |
| 795 | 51.11 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 4 | 2 |
| 808 | 51.11 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 853 | 51.14 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 860 | 51.15 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 1 | 6 |
| 877 | 51.16 | wind | 1.0 | 4320 | < th | dose independent | rect. | 3 | 3 |
| 928 | 51.20 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 19 | 13 |
| 957 | 51.22 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 16 | 17 |
| 961 | 51.22 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 16 | 17 |
| 962 | 51.23 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 3 | 3 |
| 971 | 51.23 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 13 | 15 |
| 981 | 51.23 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 13 | 15 |