Os08g0522100 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0522100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF889, eukaryote family protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	3.07	(0.0387)	R²	:	0.207
β₁	:	-0.404	(0.142)	R²_dD	:	0.0171	R²_D	:	0.000564
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	7.9	(0.82)	R²_dE	:	0.356	R²_E	:	-0.0158
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	-22.4	(3.23)	R²_dD*E	:	0.193	R²_D*E	:	-0.174
γ₁	:	-0.21	(0.0826)	R²_dN8	:	0.0152	R²_N8	:	0.00848
σ	:	0.723
deviance	:	241.31
__

_____

C
peak time of C	:	--
E
wheather	:	humidity
threshold	:	90.14
memory length	:	124
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	3.08
open length of G	:	2.25

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
244.3	0.734	3.05	-0.373	0.14	5.72	0.215	-15.5	-0.173	13.7	87.74	112	2.4	3.62
272.67	0.769	3.04	-0.323	0.155	4.86	0.132	--	-0.216	13	89.66	100	2.81	3.58
243.23	0.726	3.06	-0.369	0.119	6.86	--	-19.7	-0.192	13.5	86.94	125	2.42	3.48
269.48	0.765	3.04	-0.401	0.137	3.51	--	--	-0.214	11.6	90.47	170	2.03	3.56
241.31	0.723	3.07	-0.404	--	7.9	--	-22.4	-0.21	--	90.14	124	3.08	2.25
296.43	0.807	3.05	-0.391	0.00942	--	0.649	--	-0.232	15.5	--	--	--	--
297.18	0.807	3.05	-0.379	0.0984	--	--	--	-0.229	9.59	--	--	--	--
269.46	0.765	3.05	-0.408	--	3.82	--	--	-0.233	--	91	121	2.72	3.24
272.8	0.769	3.05	--	0.196	3.46	--	--	-0.157	13.6	91.05	176	2.22	3.12
297.75	0.806	3.05	-0.38	--	--	--	--	-0.229	--	--	--	--	--
300.96	0.812	3.04	--	0.0993	--	--	--	-0.187	9.88	--	--	--	--
273.64	0.77	3.04	--	--	3.44	--	--	-0.175	--	90.89	185	2.38	2.6
301.55	0.811	3.04	--	--	--	--	--	-0.187	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	244.65	humidity	80	90	< th	dose independent	rect.	2	4
2	246.21	humidity	90	90	< th	dose dependent	rect.	2	4
10	252.85	humidity	80	90	< th	dose independent	rect.	2	1
16	252.88	humidity	90	10	< th	dose independent	rect.	3	1
83	263.41	atmosphere	1005	10	> th	dose dependent	rect.	3	1
136	271.95	wind	5	90	> th	dose dependent	rect.	23	1
142	272.62	wind	9	720	> th	dose independent	rect.	22	4
151	272.62	wind	9	720	> th	dose dependent	rect.	22	4
160	272.72	wind	9	720	> th	dose independent	rect.	22	1
164	272.72	wind	9	720	> th	dose dependent	rect.	22	1
195	272.94	wind	5	90	> th	dose independent	rect.	23	1
196	272.95	temperature	20	10	< th	dose dependent	rect.	3	3
257	274.14	temperature	20	10	< th	dose dependent	rect.	3	1
260	274.28	humidity	80	90	< th	dose independent	rect.	22	1
270	274.49	humidity	80	90	< th	dose dependent	rect.	22	1
328	277.42	temperature	20	90	< th	dose independent	rect.	2	3
334	277.68	temperature	20	270	< th	dose independent	rect.	2	1
351	278.57	wind	3	10	> th	dose dependent	rect.	4	3
355	278.74	wind	3	10	> th	dose independent	rect.	5	1
362	278.88	wind	3	10	> th	dose dependent	rect.	2	5
363	278.90	humidity	80	10	< th	dose independent	rect.	5	1
441	280.31	wind	3	10	> th	dose independent	rect.	2	5
452	280.44	atmosphere	1005	10	> th	dose independent	rect.	3	1
495	280.94	humidity	80	1440	> th	dose independent	rect.	2	3
515	281.28	humidity	80	1440	> th	dose independent	rect.	2	1
685	282.71	wind	3	720	> th	dose dependent	rect.	12	2
691	282.75	wind	5	720	> th	dose independent	rect.	12	2
711	282.93	humidity	90	90	< th	dose independent	rect.	14	16
836	283.77	humidity	90	90	< th	dose independent	rect.	2	16
837	283.77	humidity	90	90	< th	dose independent	rect.	11	19
838	283.78	wind	5	270	> th	dose dependent	rect.	20	4
841	283.81	humidity	90	30	< th	dose independent	rect.	22	21
859	284.03	radiation	1	90	< th	dose independent	rect.	14	1
861	284.03	radiation	1	90	< th	dose dependent	rect.	14	1
890	284.28	humidity	90	30	< th	dose independent	rect.	9	21
910	284.44	wind	5	270	> th	dose independent	rect.	20	4
919	284.49	humidity	80	90	> th	dose dependent	rect.	19	13
921	284.52	radiation	40	4320	> th	dose dependent	rect.	15	1
986	284.93	radiation	20	4320	< th	dose independent	rect.	17	6
990	284.96	wind	7	90	> th	dose independent	rect.	12	6
997	285.02	wind	9	90	> th	dose dependent	rect.	12	5