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Os08g0448900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF889, eukaryote family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.18 (0.0259) R2 : 0.275
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.811 (0.0622) R2dC : 0.272 R2C : 0.27
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0823 (0.0544) R2dN8 : 0.0047 R2N8 : 0.00262
σ : 0.488
deviance : 108.67
__
_____
C
peak time of C : 10.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
90.01 0.446 7.2 -0.341 0.354 -0.679 -0.697 0.0116 -0.105 7.34 16.12 10 -- --
90.01 0.442 7.2 -0.341 0.355 -0.678 -0.701 -- -0.105 7.36 16.12 9 -- --
91.1 0.445 7.2 -0.358 0.362 -0.669 -- 0.185 -0.104 7.66 16.1 9 -- --
91.28 0.445 7.2 -0.354 0.364 -0.645 -- -- -0.105 7.88 16.12 9 -- --
97.45 0.46 7.21 -0.335 -- -0.752 -- 0.242 -0.0961 -- 16.63 12 -- --
106.04 0.483 7.19 -0.305 0.809 -- -0.148 -- -0.117 10.6 -- -- -- --
106.13 0.482 7.19 -0.311 0.809 -- -- -- -0.117 10.6 -- -- -- --
97.49 0.46 7.21 -0.357 -- -0.755 -- -- -0.107 -- 16.6 12 -- --
94.59 0.453 7.19 -- 0.38 -0.611 -- -- -0.0813 8.22 16.1 9 -- --
146.44 0.565 7.21 -0.326 -- -- -- -- -0.121 -- -- -- -- --
108.67 0.488 7.18 -- 0.811 -- -- -- -0.0823 10.6 -- -- -- --
100.85 0.468 7.2 -- -- -0.751 -- -- -0.0696 -- 16.94 12 -- --
149.25 0.57 7.2 -- -- -- -- -- -0.0847 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 88.55 atmosphere 995.0 270 > th dose independent rect. 13 17
2 88.59 radiation 40.0 10 < th dose dependent rect. 13 20
4 88.85 radiation 30.0 10 < th dose dependent sin 2 NA
8 89.21 wind 7.0 270 < th dose independent rect. 6 7
9 89.22 radiation 20.0 90 < th dose independent rect. 2 16
11 89.23 radiation 20.0 10 < th dose independent rect. 13 20
12 89.23 radiation 10.0 270 < th dose dependent sin 6 NA
13 89.35 radiation 30.0 10 < th dose dependent rect. 2 16
15 89.40 radiation 20.0 10 < th dose independent rect. 2 17
17 89.44 radiation 30.0 90 < th dose dependent rect. 2 16
18 89.45 atmosphere 995.0 270 > th dose independent rect. 2 15
19 89.46 radiation 30.0 90 < th dose independent rect. 13 18
31 89.65 wind 7.0 270 < th dose independent rect. 7 16
35 89.71 radiation 10.0 10 > th dose independent rect. 7 8
43 89.77 precipitation 0.1 270 < th dose independent rect. 13 17
44 89.77 precipitation 0.1 270 < th dose dependent rect. 13 17
46 89.79 temperature 10.0 270 > th dose dependent rect. 17 8
47 89.80 radiation 10.0 10 > th dose independent sin 2 NA
63 89.81 radiation 10.0 270 < th dose dependent rect. 1 14
69 89.85 temperature 15.0 270 > th dose independent rect. 6 7
73 89.89 radiation 10.0 10 < th dose independent sin 1 NA
88 90.00 wind 9.0 270 < th dose dependent rect. 7 6
93 90.06 radiation 10.0 270 > th dose independent rect. 6 6
96 90.06 radiation 10.0 90 > th dose independent rect. 7 8
109 90.10 precipitation 0.1 270 < th dose independent rect. 6 7
110 90.10 precipitation 0.1 270 < th dose dependent rect. 6 7
120 90.15 atmosphere 995.0 90 > th dose independent rect. 15 16
123 90.18 atmosphere 995.0 270 > th dose independent rect. 12 6
125 90.18 atmosphere 995.0 270 > th dose independent rect. 6 7
126 90.18 atmosphere 1015.0 270 < th dose independent rect. 6 7
127 90.18 radiation 10.0 270 < th dose independent rect. 1 14
128 90.18 temperature 10.0 270 > th dose independent rect. 13 17
130 90.20 wind 7.0 270 < th dose independent rect. 18 18
135 90.24 radiation 30.0 10 < th dose dependent rect. 5 13
139 90.27 precipitation 0.1 90 < th dose independent rect. 15 16
140 90.27 radiation 30.0 90 < th dose dependent sin 4 NA
141 90.27 precipitation 0.1 90 < th dose dependent rect. 15 16
163 90.37 humidity 50.0 270 > th dose independent rect. 6 7
172 90.45 wind 7.0 270 < th dose independent rect. 7 18
173 90.46 wind 9.0 270 < th dose independent rect. 17 9
188 90.55 radiation 10.0 270 < th dose independent rect. 23 8
205 90.62 radiation 10.0 270 < th dose independent sin 7 NA
206 90.62 humidity 50.0 270 > th dose independent rect. 17 9
210 90.65 humidity 50.0 270 > th dose independent rect. 7 16
233 90.69 wind 7.0 270 < th dose independent rect. 17 20
243 90.72 radiation 10.0 270 < th dose dependent rect. 23 16
244 90.73 precipitation 0.1 270 < th dose independent rect. 2 15
245 90.73 precipitation 0.1 270 < th dose dependent rect. 2 15
251 90.77 radiation 10.0 10 > th dose independent rect. 9 6
252 90.77 radiation 10.0 270 < th dose independent rect. 17 9
257 90.79 radiation 10.0 10 < th dose independent rect. 5 14
266 90.81 radiation 10.0 270 < th dose independent rect. 23 16
273 90.83 radiation 40.0 90 < th dose independent rect. 15 16
275 90.83 wind 1.0 270 > th dose independent rect. 12 18
283 90.86 temperature 10.0 270 > th dose independent rect. 17 9
287 90.86 temperature 10.0 270 > th dose independent rect. 2 15
288 90.86 atmosphere 1015.0 270 < th dose independent rect. 2 15
296 90.89 precipitation 0.1 270 < th dose independent rect. 23 8
298 90.89 precipitation 0.1 270 < th dose dependent rect. 23 8
300 90.90 wind 1.0 270 > th dose independent rect. 12 6
303 90.90 temperature 10.0 90 > th dose independent rect. 15 16
315 90.93 radiation 40.0 270 < th dose dependent rect. 17 9
332 91.01 humidity 90.0 10 < th dose independent rect. 7 8
338 91.03 humidity 70.0 270 > th dose independent rect. 23 8
376 91.14 wind 9.0 270 < th dose independent rect. 13 17
379 91.16 humidity 90.0 90 < th dose independent rect. 7 8
395 91.19 wind 9.0 270 < th dose independent rect. 23 8
398 91.19 radiation 40.0 270 < th dose dependent rect. 23 8
401 91.20 temperature 10.0 270 > th dose independent rect. 23 8
402 91.20 temperature 30.0 270 < th dose independent rect. 23 8
403 91.20 humidity 50.0 270 > th dose independent rect. 23 8
405 91.20 atmosphere 995.0 270 > th dose independent rect. 23 8
407 91.20 temperature 10.0 270 > th dose independent rect. 7 16
428 91.23 wind 7.0 10 < th dose independent rect. 9 17
453 91.31 radiation 10.0 270 < th dose independent rect. 1 6
484 91.35 temperature 10.0 10 > th dose dependent rect. 9 17
497 91.40 radiation 10.0 270 > th dose independent sin 7 NA
527 91.43 wind 1.0 90 > th dose independent rect. 7 8
539 91.46 wind 7.0 90 < th dose independent rect. 9 16
553 91.47 humidity 50.0 270 > th dose independent rect. 7 18
568 91.51 humidity 90.0 270 < th dose independent rect. 7 5
581 91.55 humidity 90.0 10 < th dose independent rect. 9 6
588 91.56 radiation 30.0 10 < th dose dependent rect. 1 23
589 91.57 radiation 10.0 90 > th dose independent sin 3 NA
609 91.60 temperature 10.0 270 > th dose independent rect. 12 6
611 91.60 atmosphere 1015.0 270 < th dose independent rect. 12 6
612 91.60 temperature 10.0 270 > th dose independent rect. 18 18
627 91.64 humidity 50.0 270 > th dose independent rect. 7 4
629 91.64 atmosphere 1015.0 270 < th dose independent rect. 7 16
643 91.70 precipitation 0.1 270 < th dose independent rect. 17 9
647 91.70 precipitation 0.1 270 < th dose dependent rect. 17 9
657 91.72 humidity 70.0 90 > th dose independent rect. 1 8
660 91.73 wind 1.0 270 > th dose independent rect. 23 8
689 91.79 precipitation 0.1 270 < th dose independent rect. 12 6
691 91.79 precipitation 0.1 270 < th dose dependent rect. 12 6
697 91.83 atmosphere 1015.0 270 < th dose independent rect. 23 8
714 91.86 radiation 20.0 270 < th dose dependent rect. 1 6
724 91.87 atmosphere 995.0 270 > th dose independent rect. 18 18
744 91.92 precipitation 0.1 270 < th dose independent rect. 7 16
747 91.92 precipitation 0.1 270 < th dose dependent rect. 7 16
788 91.99 humidity 50.0 270 > th dose independent rect. 18 18
796 92.01 wind 1.0 270 > th dose independent rect. 17 9
805 92.03 radiation 30.0 10 < th dose dependent no NA NA
806 92.03 humidity 50.0 270 > th dose dependent rect. 23 8
807 92.04 radiation 10.0 270 > th dose independent rect. 9 1
812 92.05 wind 9.0 90 < th dose independent rect. 15 16
822 92.07 temperature 10.0 270 > th dose dependent rect. 18 18
834 92.11 radiation 30.0 10 < th dose dependent rect. 15 23
848 92.14 radiation 40.0 90 < th dose independent rect. 12 7
868 92.17 humidity 50.0 270 > th dose independent rect. 17 20
880 92.20 radiation 10.0 90 < th dose independent sin 3 NA
883 92.20 precipitation 0.1 270 < th dose independent rect. 1 6
884 92.20 precipitation 0.1 270 < th dose dependent rect. 1 6
898 92.25 wind 1.0 270 > th dose independent rect. 7 5
900 92.25 precipitation 0.1 270 < th dose independent rect. 18 18
902 92.25 precipitation 0.1 270 < th dose dependent rect. 18 18
904 92.26 precipitation 0.1 270 < th dose independent rect. 13 4
909 92.26 precipitation 0.1 270 < th dose dependent rect. 13 4
910 92.26 temperature 10.0 270 > th dose dependent rect. 6 6
925 92.29 radiation 30.0 10 < th dose independent rect. 2 7
946 92.32 humidity 70.0 270 > th dose independent rect. 1 6
961 92.34 radiation 10.0 10 > th dose independent rect. 9 23
989 92.37 wind 1.0 270 > th dose independent rect. 2 15
993 92.38 atmosphere 1010.0 270 < th dose independent rect. 1 6