BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0448900 Os08g0448900|Os08g0448900
         (1740 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G28780.1  | chr5:10812907-10814173 REVERSE LENGTH=338          113   8e-25
AT3G51700.1  | chr3:19179443-19181145 REVERSE LENGTH=345           98   3e-20
AT3G51690.1  | chr3:19176731-19178107 REVERSE LENGTH=332           87   7e-17
AT1G14800.1  | chr1:5099572-5102558 FORWARD LENGTH=385             61   7e-09

>AT5G28780.1 | chr5:10812907-10814173 REVERSE LENGTH=338
          Length = 337

 Score =  113 bits (283), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 68/188 (36%), Positives = 91/188 (48%), Gaps = 3/188 (1%)

Query: 1110 VGNGAEPYVDVPDQPKGMFIEIPQSLLLSPDCRNLDGLISFVYDSGCQTTDLRSYLCERA 1169
            VGNG  P  +  D   G  +E+  S  L  +   L  +    Y     +     YL ER 
Sbjct: 63   VGNGNAPTCETDD---GEVVEMDTSFFLKHNGNRLQQVTKGAYVQFSVSQPNFQYLTERG 119

Query: 1170 ILAPTNDVVSEINNKMIAQLATTEMXXXXXXXXXXXXXNHTTLEALYPTEFLNTISINGL 1229
            IL P N+ V EIN  M++Q+                       EALY  ++LN++    L
Sbjct: 120  ILTPHNEYVDEINAYMLSQVGGDSKEYLSSYSIGKADTIGADYEALYHVKYLNSLEFPSL 179

Query: 1230 LEHVLHLKIGVPIMLLRNLDASRGLCNGTRLIVTQLTNRVIEGEIITGKAKGTKAYIPRI 1289
             +H + LK GVPIM +RN +   GLCNGTRLIVT L  +VIE +I+TG   G    IPR 
Sbjct: 180  PKHKISLKKGVPIMQMRNFNQKEGLCNGTRLIVTNLGEQVIEAQIVTGTHAGKMVSIPRF 239

Query: 1290 ITTSAQSK 1297
            I +  QS+
Sbjct: 240  ILSPPQSE 247



>AT3G51700.1 | chr3:19179443-19181145 REVERSE LENGTH=345
          Length = 344

 Score = 98.2 bits (243), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/197 (34%), Positives = 103/197 (52%), Gaps = 7/197 (3%)

Query: 1103 FAEWLLRVGNGAEPYVDVPDQPKGMFIEIPQSLLLSPDCRN-LDGLISFVYDSGCQTTDL 1161
            F +W+  +G      ++ P+  +   I+I + LL++ +C++ +  ++  VY      +  
Sbjct: 60   FTKWITNIGGEN---INKPNDGETK-IDIHEDLLIT-ECKDPIKTIVDEVYGESFTESYN 114

Query: 1162 RSYLCERAILAPTNDVVSEINNKMIAQLATTEMXXXXXXXXXXXXXNHTTLEALYPTEFL 1221
              +  ERAIL  TNDV  EIN+ M++QL   E              +    + LYP EFL
Sbjct: 115  PDFYQERAILCHTNDVADEINDYMLSQLQGEETKCYGADTIYPTHASPND-KMLYPLEFL 173

Query: 1222 NTISINGLLEHVLHLKIGVPIMLLRNLDASRGLCNGTRLIVTQLTNRVIEGEIITGKAKG 1281
            N+I I G  +  L LK+G P+MLLR+L     L  GTRL +T++   V+E  IITG   G
Sbjct: 174  NSIKIPGFPDFKLRLKVGAPVMLLRDLAPYGWLRKGTRLQITRVETFVLEAMIITGNNHG 233

Query: 1282 TKAYIPRIITTSAQSKF 1298
             K  IPRI +   ++KF
Sbjct: 234  EKVLIPRIPSDLREAKF 250



>AT3G51690.1 | chr3:19176731-19178107 REVERSE LENGTH=332
          Length = 331

 Score = 87.4 bits (215), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 85/170 (50%), Gaps = 4/170 (2%)

Query: 1129 IEIPQSLLLSPDCRNLDGLISFVYDSGCQTTDLRSYLCERAILAPTNDVVSEINNKMIAQ 1188
            I+I + LL++     +  L+  VY      +    +  + AIL   +D V +IN+ M++ 
Sbjct: 81   IDISKDLLITESKDPIKTLLKEVYGEYFAKSYNPDFCHDSAILCHRDDDVDQINDYMLSL 140

Query: 1189 LATTEMXXXXXXXXXXXXXNHTTLEALYPTEFLNTISINGLLEHVLHLKIGVPIMLLRNL 1248
            L   E              +    +   P E LN+I + GL +  L LK+G P+MLLR+L
Sbjct: 141  LPGEEKECLSTDSISPSPND----DMFVPLEVLNSIKVPGLPDFKLRLKVGAPVMLLRDL 196

Query: 1249 DASRGLCNGTRLIVTQLTNRVIEGEIITGKAKGTKAYIPRIITTSAQSKF 1298
            D SRG   GTRL +T+L   ++E  II G   G K +IPRI +   ++ F
Sbjct: 197  DPSRGFFTGTRLQITRLCGFLLEAMIIAGNKHGKKIWIPRIASYPTETNF 246



>AT1G14800.1 | chr1:5099572-5102558 FORWARD LENGTH=385
          Length = 384

 Score = 60.8 bits (146), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 9/157 (5%)

Query: 1294 AQSKFISMASSA--TALKDVTIGQQNCKVFGRLIRLWDALNMRSKSADPLISIDGILLDE 1351
            A+   +++ S A   A   + +G+   +V GRL+R WDA N+  K     + I  +LLDE
Sbjct: 2    AEVDVVAIPSKANYVAFDALRLGRSTQQVVGRLLRFWDARNI--KKDGQFMGIVLLLLDE 59

Query: 1352 HGSMAQISVPKKLEKQFRPLLNEGSVYLITNTTAVDARRKTYIYQ--HQSYMIQFKHETK 1409
              S+    +P  L   FR +L EG ++   N +  +  R T +Y+     ++++F   T 
Sbjct: 60   KCSVIHAFIPAALASHFRQVLREGIIF---NVSGFEVGRCTKLYKITDHPFLLRFLPATT 116

Query: 1410 VNHLESRGSTIPKFSFSFCPFDQIPGKTITSKPLLGK 1446
            +  +   G TI +  F    FD +     T+  L G+
Sbjct: 117  IIEVSDVGPTIEREKFMLRNFDNLQALANTNIELPGQ 153



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 36,978,988
Number of extensions: 1580409
Number of successful extensions: 3803
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3800
Number of HSP's successfully gapped: 4
Length of query: 1740
Length of database: 11,106,569
Length adjustment: 113
Effective length of query: 1627
Effective length of database: 8,008,561
Effective search space: 13029928747
Effective search space used: 13029928747
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 119 (50.4 bits)