BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0289300 Os08g0289300|J065129I07
(348 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0289300 DEAD/DEAH box helicase, N-terminal domain cont... 681 0.0
Os06g0255700 DEAD/DEAH box helicase, N-terminal domain cont... 584 e-167
Os07g0434500 DEAD/DEAH box helicase, N-terminal domain cont... 421 e-118
Os03g0165266 DEAD/DEAH box helicase, N-terminal domain cont... 295 4e-80
Os02g0650800 112 3e-25
Os10g0457700 Zinc finger, FYVE/PHD-type domain containing p... 95 7e-20
>Os08g0289300 DEAD/DEAH box helicase, N-terminal domain containing protein
Length = 348
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/348 (94%), Positives = 330/348 (94%)
Query: 1 LQQNDVPSQSYRTMIEEEKPVKESEGLEDLWKDFSLAAECTKLDTNEDMSXXXXXXXXXX 60
LQQNDVPSQSYRTMIEEEKPVKESEGLEDLWKDFSLAAECTKLDTNEDMS
Sbjct: 1 LQQNDVPSQSYRTMIEEEKPVKESEGLEDLWKDFSLAAECTKLDTNEDMSNEKDVDDENE 60
Query: 61 XXXXXXXXIRIHEDLGHVCRICGMIVRKAETIIDYQWKKASRTRTNYYESRSKDADEIDT 120
IRIHEDLGHVCRICGMIVRKAETIIDYQWKKASRTRTNYYESRSKDADEIDT
Sbjct: 61 MDDDCNHDIRIHEDLGHVCRICGMIVRKAETIIDYQWKKASRTRTNYYESRSKDADEIDT 120
Query: 121 GAVKVSEDFIVSDIAIHPRHAKQMRPHQLEGFSFLVKNLVGDKPGGCILAHAPGSGKTFM 180
GAVKVSEDFIVSDIAIHPRHAKQMRPHQLEGFSFLVKNLVGDKPGGCILAHAPGSGKTFM
Sbjct: 121 GAVKVSEDFIVSDIAIHPRHAKQMRPHQLEGFSFLVKNLVGDKPGGCILAHAPGSGKTFM 180
Query: 181 LISFIQSFLAKYPSARPLVVLPKGIGSTWKREFQWWQVEDIPLYDFYSVKADKRVEQLEV 240
LISFIQSFLAKYPSARPLVVLPKGIGSTWKREFQWWQVEDIPLYDFYSVKADKRVEQLEV
Sbjct: 181 LISFIQSFLAKYPSARPLVVLPKGIGSTWKREFQWWQVEDIPLYDFYSVKADKRVEQLEV 240
Query: 241 LKYWEAQMSILFLGYKQFSRIICGDGDGNIAAACWDRLLMVPNLLILDEGHTPRNRETDV 300
LKYWEAQMSILFLGYKQFSRIICGDGDGNIAAACWDRLLMVPNLLILDEGHTPRNRETDV
Sbjct: 241 LKYWEAQMSILFLGYKQFSRIICGDGDGNIAAACWDRLLMVPNLLILDEGHTPRNRETDV 300
Query: 301 LASLKRHHAKWSCLVHFSRTTFRKCLTSWTLCTLSFSRWNRPVLLLDV 348
LASLKRHHAKWSCLVHFSRTTFRKCLTSWTLCTLSFSRWNRPVLLLDV
Sbjct: 301 LASLKRHHAKWSCLVHFSRTTFRKCLTSWTLCTLSFSRWNRPVLLLDV 348
>Os06g0255700 DEAD/DEAH box helicase, N-terminal domain containing protein
Length = 946
Score = 584 bits (1506), Expect = e-167, Method: Compositional matrix adjust.
Identities = 282/306 (92%), Positives = 283/306 (92%)
Query: 1 LQQNDVPSQSYRTMIEEEKPVKESEGLEDLWKDFSLAAECTKLDTNEDMSXXXXXXXXXX 60
LQQNDVPSQSYRTMIEEEKPVKES+GLEDLWKDFSLAAECTKLDTNEDMS
Sbjct: 262 LQQNDVPSQSYRTMIEEEKPVKESDGLEDLWKDFSLAAECTKLDTNEDMSNEKDVDDENE 321
Query: 61 XXXXXXXXIRIHEDLGHVCRICGMIVRKAETIIDYQWKKASRTRTNYYESRSKDADEIDT 120
IRIHEDLGHVCRICGMIVRKAETIIDYQWKKASRTRTNYYESRSKDADEIDT
Sbjct: 322 MDDDCNHDIRIHEDLGHVCRICGMIVRKAETIIDYQWKKASRTRTNYYESRSKDADEIDT 381
Query: 121 GAVKVSEDFIVSDIAIHPRHAKQMRPHQLEGFSFLVKNLVGDKPGGCILAHAPGSGKTFM 180
GAVKVSEDFIVSDIAIHPRHAKQMRPHQLEGFSFLVKNLVGDKPGGCILAHAPGSGKTFM
Sbjct: 382 GAVKVSEDFIVSDIAIHPRHAKQMRPHQLEGFSFLVKNLVGDKPGGCILAHAPGSGKTFM 441
Query: 181 LISFIQSFLAKYPSARPLVVLPKGIGSTWKREFQWWQVEDIPLYDFYSVKADKRVEQLEV 240
LISFIQSFLAKYPSARPLVVLPKGI TWKREFQ WQVEDIPLYDFYSVKADKRVEQLEV
Sbjct: 442 LISFIQSFLAKYPSARPLVVLPKGILGTWKREFQRWQVEDIPLYDFYSVKADKRVEQLEV 501
Query: 241 LKYWEAQMSILFLGYKQFSRIICGDGDGNIAAACWDRLLMVPNLLILDEGHTPRNRETDV 300
LK WEAQMSILFLGYKQFSRIICGDGDGNIAAAC DRLLMVPNLLILDEGHTPRNRETDV
Sbjct: 502 LKSWEAQMSILFLGYKQFSRIICGDGDGNIAAACRDRLLMVPNLLILDEGHTPRNRETDV 561
Query: 301 LASLKR 306
LASLKR
Sbjct: 562 LASLKR 567
>Os07g0434500 DEAD/DEAH box helicase, N-terminal domain containing protein
Length = 909
Score = 421 bits (1082), Expect = e-118, Method: Compositional matrix adjust.
Identities = 200/208 (96%), Positives = 202/208 (97%)
Query: 99 KASRTRTNYYESRSKDADEIDTGAVKVSEDFIVSDIAIHPRHAKQMRPHQLEGFSFLVKN 158
KASRTRTNYYESRSKDAD+IDTGAVKVSEDFIVSDIAIHPRHAKQMRPHQLEGFSFLVKN
Sbjct: 323 KASRTRTNYYESRSKDADDIDTGAVKVSEDFIVSDIAIHPRHAKQMRPHQLEGFSFLVKN 382
Query: 159 LVGDKPGGCILAHAPGSGKTFMLISFIQSFLAKYPSARPLVVLPKGIGSTWKREFQWWQV 218
LVGDKPGGCILAHAPGSGKTFMLISFIQSFLAKYPSARPLVVLPKGI TWKREFQ WQV
Sbjct: 383 LVGDKPGGCILAHAPGSGKTFMLISFIQSFLAKYPSARPLVVLPKGILGTWKREFQRWQV 442
Query: 219 EDIPLYDFYSVKADKRVEQLEVLKYWEAQMSILFLGYKQFSRIICGDGDGNIAAACWDRL 278
EDIPLYDFYSVKADKR EQLEVLK WEA+MSILFLGYKQFSRIICGDGDGNIAAAC DRL
Sbjct: 443 EDIPLYDFYSVKADKRTEQLEVLKSWEARMSILFLGYKQFSRIICGDGDGNIAAACRDRL 502
Query: 279 LMVPNLLILDEGHTPRNRETDVLASLKR 306
LMVPNLLILDEGHTPRNRETDVLASLKR
Sbjct: 503 LMVPNLLILDEGHTPRNRETDVLASLKR 530
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/42 (97%), Positives = 42/42 (100%)
Query: 1 LQQNDVPSQSYRTMIEEEKPVKESEGLEDLWKDFSLAAECTK 42
LQQNDVPSQSYRTMIEEEKPVKES+GLEDLWKDFSLAAECTK
Sbjct: 282 LQQNDVPSQSYRTMIEEEKPVKESDGLEDLWKDFSLAAECTK 323
>Os03g0165266 DEAD/DEAH box helicase, N-terminal domain containing protein
Length = 1078
Score = 295 bits (755), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 153/303 (50%), Positives = 196/303 (64%), Gaps = 10/303 (3%)
Query: 7 PSQSYRTMIEEEKPVKESEGLEDLWKDFSLAAECTKLDTNEDMSXXXXXXXXXXXXXXXX 66
P+ + PV E EGL W D LA C+K D +
Sbjct: 399 PTNGNFDQYDNSSPVDELEGL---WMDMYLAMACSKT-VGSDHNIVPSENSCEQAEDECQ 454
Query: 67 XXIRIHEDLGHVCRICGMIVRKAETIIDYQWKKASRT-RTNYYESR-SKDADEIDTGAVK 124
+ +DLG VCR+CG+I ++ E I +YQWKK ++ R E R S DAD ID +
Sbjct: 455 HDFLMKDDLGIVCRVCGLIQQRIENIFEYQWKKRKQSYRARPSEHRNSSDADAIDKTSGA 514
Query: 125 VSEDFIVSD-IAIHPRHAKQMRPHQLEGFSFLVKNLVG-DKPGGCILAHAPGSGKTFMLI 182
+ E +V D + +HP+H++ M+PHQ+EGF+FLVKNL + PGGCILAHAPGSGKTF++I
Sbjct: 515 ILE--VVPDALCLHPQHSQHMKPHQVEGFNFLVKNLADENNPGGCILAHAPGSGKTFLII 572
Query: 183 SFIQSFLAKYPSARPLVVLPKGIGSTWKREFQWWQVEDIPLYDFYSVKADKRVEQLEVLK 242
SF+ SFLAKYP+ RPL++LPKGI STW+ EF WQV+DIPLYDFYS KADKR EQL+VL
Sbjct: 573 SFVHSFLAKYPAGRPLIILPKGILSTWRTEFLHWQVDDIPLYDFYSSKADKRSEQLKVLN 632
Query: 243 YWEAQMSILFLGYKQFSRIICGDGDGNIAAACWDRLLMVPNLLILDEGHTPRNRETDVLA 302
WE SIL LGY+QF+ I+ A C ++LL VP+L+ILDEGHTPRN ETD+L
Sbjct: 633 LWEESRSILLLGYQQFACIVSDHTSDTEAIMCQEKLLKVPSLVILDEGHTPRNEETDLLT 692
Query: 303 SLK 305
SL+
Sbjct: 693 SLE 695
>Os02g0650800
Length = 1439
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 106/201 (52%), Gaps = 44/201 (21%)
Query: 138 PRHAKQMRPHQLEGFSFLVKNLVGDKP------------GGCILAHAPGSGKTFMLISFI 185
P + M PHQ EGF F+ + L G GGC+++HAPG+GKT + I+F+
Sbjct: 876 PGVREDMFPHQQEGFEFMWRKLAGGTSIEQLRNNANTIEGGCVISHAPGTGKTRLAITFV 935
Query: 186 QSFLAKYPSARPLVVLPKGIGSTWKREFQWWQVEDIPLYDFYSV----KADKRVEQLEV- 240
QS+ A +P P+++ P+G+ +TW++EF+ W+V+ +P + S K D+ ++QL +
Sbjct: 936 QSYFAFFPECCPVIIAPRGMLATWEQEFRKWKVK-VPFHVLNSKEINWKEDRTIKQLAIM 994
Query: 241 ----------------------LKYWEAQMSILFLGYKQFSRIICGDG-DGNIAAACWDR 277
L W SI+ + Y F ++ DGN+ +
Sbjct: 995 DENLAQSLARNKLDHKFRRKLKLASWRKGSSIIGVSYTLFRKLANQSSMDGNM---VRNL 1051
Query: 278 LLMVPNLLILDEGHTPRNRET 298
LL +P+LL+LDEGHTPRN+++
Sbjct: 1052 LLEMPDLLVLDEGHTPRNKKS 1072
>Os10g0457700 Zinc finger, FYVE/PHD-type domain containing protein
Length = 1319
Score = 95.1 bits (235), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 123/253 (48%), Gaps = 20/253 (7%)
Query: 73 EDLGHVCRI-CGMIVRKAETIIDYQWKKASRTRTNY----YESRSKDADEIDTG-AVKVS 126
E+LG ++ M + E + Q + AS+ ++N E+ S+ ++ + G V ++
Sbjct: 638 EELGEETKLKIAMEKARQEHLKSMQEQSASKLKSNNIGISLEAPSEVSEYVGDGHIVNLA 697
Query: 127 EDFIVSDIAIHPRHAKQMRPHQLEGFSFLVKNLV--------GDKPGGCILAHAPGSGKT 178
+ + + I + +++PHQ+ G F+ +N++ GDK GCILAH G GKT
Sbjct: 698 REEDEAPVRIPSSISAKLKPHQVSGIRFMWENVIQSVKKVKSGDKGFGCILAHNMGLGKT 757
Query: 179 FMLISFIQSFL--AKYPSARPLVVLPKGIGSTWKREF-QWWQVEDIPLYDFYSVKADKRV 235
F +I+F+ + + + L+V P + WK+EF +W E PL Y ++ R
Sbjct: 758 FQVITFLYTVMRCIQLGLRTALIVTPVNVLHNWKKEFIKWCPAESKPLR-VYMLEDVPRA 816
Query: 236 EQLEVLKYWEAQMSILFLGYKQFSRIICGDG--DGNIAAACWDRLLMVPNLLILDEGHTP 293
+LK W + +L +GY F + G D +A + L P++L+ DE H
Sbjct: 817 NIQYLLKKWRIKGGVLLIGYSSFRNLSLGRSARDKTVANEITNALQCGPDILVCDEAHII 876
Query: 294 RNRETDVLASLKR 306
+NR D +LK+
Sbjct: 877 KNRRADTTQALKQ 889
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.136 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,205,005
Number of extensions: 497817
Number of successful extensions: 1020
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1012
Number of HSP's successfully gapped: 7
Length of query: 348
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 246
Effective length of database: 11,709,973
Effective search space: 2880653358
Effective search space used: 2880653358
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)