Os08g0289300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DEAD/DEAH box helicase, N-terminal domain containing protein.
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Os08g0289300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DEAD/DEAH box helicase, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.35 | 0.232 | 11.3 | -0.0453 | 0.378 | -0.489 | 0.144 | -1.56 | 0.441 | 6.32 | 0.3688 | 4795 | -- | -- |
| 25.52 | 0.235 | 11.3 | -0.00731 | 0.384 | -0.495 | 0.191 | -- | 0.458 | 6.32 | 1.51 | 5034 | -- | -- |
| 24.37 | 0.23 | 11.3 | -0.0415 | 0.378 | -0.452 | -- | -1.41 | 0.441 | 6.31 | 0.6594 | 4878 | -- | -- |
| 25.58 | 0.236 | 11.3 | -0.00529 | 0.379 | -0.495 | -- | -- | 0.455 | 6.25 | 1.5 | 5038 | -- | -- |
| 31.75 | 0.262 | 11.3 | -0.0363 | -- | -0.429 | -- | -1.33 | 0.448 | -- | 0.7369 | 5246 | -- | -- |
| 30.33 | 0.258 | 11.3 | 0.126 | 0.382 | -- | 0.21 | -- | 0.398 | 6.24 | -- | -- | -- | -- |
| 30.43 | 0.258 | 11.3 | 0.128 | 0.383 | -- | -- | -- | 0.397 | 6.24 | -- | -- | -- | -- |
| 33.1 | 0.268 | 11.3 | -0.0194 | -- | -0.507 | -- | -- | 0.455 | -- | 1.5 | 5214 | -- | -- |
| 25.58 | 0.236 | 11.3 | -- | 0.382 | -0.493 | -- | -- | 0.454 | 6.26 | 1.5 | 5038 | -- | -- |
| 38.04 | 0.288 | 11.3 | 0.139 | -- | -- | -- | -- | 0.405 | -- | -- | -- | -- | -- |
| 30.87 | 0.26 | 11.3 | -- | 0.385 | -- | -- | -- | 0.383 | 6.22 | -- | -- | -- | -- |
| 33.08 | 0.268 | 11.3 | -- | -- | -0.495 | -- | -- | 0.459 | -- | 1.5 | 5214 | -- | -- |
| 38.54 | 0.29 | 11.3 | -- | -- | -- | -- | -- | 0.39 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.84 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 4 | 23.90 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 5 | 23.90 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 6 | 23.93 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 29 | 24.09 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 20 |
| 30 | 24.09 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 20 |
| 32 | 24.09 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 20 |
| 57 | 24.15 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 17 | NA |
| 58 | 24.15 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 17 | NA |
| 60 | 24.15 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 10 | 14 |
| 62 | 24.15 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 15 |
| 70 | 24.15 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 17 | NA |
| 73 | 24.15 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 15 |
| 78 | 24.16 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 80 | 24.16 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 11 | 13 |
| 91 | 24.16 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 93 | 24.16 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 11 | 13 |
| 102 | 24.17 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 11 |
| 103 | 24.17 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 11 |
| 120 | 24.17 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 11 |
| 127 | 24.18 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 352 | 24.30 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 7 |
| 353 | 24.30 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 7 |
| 383 | 24.32 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 10 |
| 384 | 24.32 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 10 |
| 398 | 24.33 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 23 | 22 |
| 409 | 24.33 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 23 | 22 |
| 412 | 24.34 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 12 | 8 |
| 426 | 24.34 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 23 | 22 |
| 454 | 24.36 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 472 | 24.37 | humidity | 60.0 | 14400 | > th | dose independent | sin | 14 | NA |
| 522 | 24.38 | humidity | 70.0 | 14400 | < th | dose dependent | sin | 13 | NA |
| 549 | 24.39 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 15 | 16 |
| 578 | 24.39 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 18 | 4 |
| 585 | 24.39 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 15 | 16 |
| 631 | 24.40 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 670 | 24.41 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 15 | 16 |
| 709 | 24.41 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 3 | 21 |
| 733 | 24.42 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 16 | 22 |
| 736 | 24.42 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 22 |
| 756 | 24.42 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 11 | 19 |
| 759 | 24.42 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 21 |
| 764 | 24.42 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 22 |
| 773 | 24.43 | precipitation | 0.1 | 14400 | > th | dose independent | no | NA | NA |
| 774 | 24.43 | precipitation | 0.1 | 14400 | < th | dose independent | no | NA | NA |
| 800 | 24.43 | precipitation | 0.1 | 14400 | < th | dose dependent | no | NA | NA |
| 816 | 24.43 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 17 |
| 861 | 24.44 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 887 | 24.44 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 22 |
| 898 | 24.45 | humidity | 60.0 | 14400 | < th | dose independent | sin | 14 | NA |
| 947 | 24.45 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 23 |
| 978 | 24.46 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 18 | 6 |