Os07g0434500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DEAD/DEAH box helicase, N-terminal domain containing protein.
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Os07g0434500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DEAD/DEAH box helicase, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.81 | 0.273 | 11.2 | 0.843 | 0.0262 | -0.294 | -1.05 | 1 | 0.396 | 17 | 19.66 | 1614 | -- | -- |
| 35.33 | 0.277 | 11.2 | 0.75 | 0.0172 | -0.461 | 0.889 | -- | 0.348 | 4.18 | 18.7 | 2757 | -- | -- |
| 35.57 | 0.278 | 11.2 | 0.86 | 0.0987 | -0.315 | -- | 0.902 | 0.382 | 22.9 | 20 | 1360 | -- | -- |
| 36.73 | 0.282 | 11.2 | 0.801 | 0.12 | -0.557 | -- | -- | 0.373 | 23.5 | 18.51 | 2745 | -- | -- |
| 36.17 | 0.28 | 11.1 | 0.883 | -- | -0.263 | -- | 1.16 | 0.393 | -- | 18.5 | 2745 | -- | -- |
| 38.99 | 0.293 | 11.2 | 0.52 | 0.038 | -- | -1.1 | -- | 0.282 | 17.2 | -- | -- | -- | -- |
| 41.25 | 0.301 | 11.2 | 0.518 | 0.116 | -- | -- | -- | 0.276 | 22.1 | -- | -- | -- | -- |
| 37.59 | 0.286 | 11.2 | 0.791 | -- | -0.584 | -- | -- | 0.382 | -- | 18.5 | 2784 | -- | -- |
| 47.75 | 0.324 | 11.2 | -- | 0.1 | -0.115 | -- | -- | 0.236 | 21.7 | 20.21 | 1264 | -- | -- |
| 42.07 | 0.303 | 11.2 | 0.52 | -- | -- | -- | -- | 0.276 | -- | -- | -- | -- | -- |
| 48.33 | 0.325 | 11.2 | -- | 0.119 | -- | -- | -- | 0.218 | 22.4 | -- | -- | -- | -- |
| 48.26 | 0.325 | 11.2 | -- | -- | -0.142 | -- | -- | 0.24 | -- | 20 | 1362 | -- | -- |
| 49.19 | 0.327 | 11.2 | -- | -- | -- | -- | -- | 0.218 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.92 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 2 | 29.92 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 3 | 30.10 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 4 | 30.10 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 19 | 30.29 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 32 | 30.69 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 43 | 30.94 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 55 | 31.07 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 68 | 31.47 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 4 |
| 71 | 31.50 | humidity | 90 | 14400 | < th | dose dependent | rect. | 21 | 3 |
| 77 | 31.57 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 86 | 31.66 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 8 |
| 92 | 31.67 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 100 | 31.73 | humidity | 50 | 14400 | > th | dose dependent | rect. | 20 | 6 |
| 102 | 31.74 | humidity | 80 | 4320 | > th | dose independent | rect. | 22 | 2 |
| 107 | 31.77 | humidity | 50 | 14400 | > th | dose dependent | rect. | 20 | 12 |
| 114 | 31.80 | humidity | 50 | 14400 | > th | dose dependent | rect. | 21 | 4 |
| 133 | 31.85 | wind | 5 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 138 | 31.86 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 142 | 31.88 | wind | 7 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 153 | 31.91 | humidity | 80 | 14400 | > th | dose independent | sin | 13 | NA |
| 205 | 32.07 | wind | 7 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 252 | 32.19 | humidity | 90 | 720 | > th | dose independent | rect. | 12 | 1 |
| 255 | 32.19 | humidity | 90 | 720 | > th | dose dependent | rect. | 12 | 1 |
| 263 | 32.22 | humidity | 80 | 14400 | < th | dose independent | rect. | 17 | 10 |
| 284 | 32.27 | humidity | 80 | 14400 | < th | dose independent | rect. | 16 | 15 |
| 295 | 32.30 | humidity | 70 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 305 | 32.31 | humidity | 80 | 14400 | < th | dose independent | sin | 13 | NA |
| 334 | 32.36 | humidity | 90 | 14400 | < th | dose dependent | rect. | 20 | 11 |
| 341 | 32.38 | humidity | 70 | 14400 | > th | dose dependent | sin | 10 | NA |
| 401 | 32.50 | humidity | 80 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 435 | 32.56 | wind | 5 | 4320 | > th | dose dependent | rect. | 15 | 4 |
| 467 | 32.60 | humidity | 80 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 482 | 32.65 | wind | 5 | 4320 | > th | dose dependent | rect. | 15 | 2 |
| 572 | 32.82 | humidity | 80 | 14400 | > th | dose independent | rect. | 20 | 17 |
| 583 | 32.84 | humidity | 80 | 14400 | > th | dose independent | rect. | 21 | 15 |
| 598 | 32.86 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 645 | 32.92 | humidity | 60 | 14400 | > th | dose independent | rect. | 21 | 11 |
| 696 | 32.98 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 697 | 32.98 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 702 | 32.99 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 6 |
| 703 | 32.99 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 6 |
| 730 | 33.02 | radiation | 1 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 742 | 33.02 | radiation | 1 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 839 | 33.11 | humidity | 60 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 840 | 33.11 | radiation | 30 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 876 | 33.13 | temperature | 20 | 10 | < th | dose independent | rect. | 12 | 17 |
| 896 | 33.15 | humidity | 90 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 917 | 33.16 | humidity | 60 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 919 | 33.16 | humidity | 60 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 921 | 33.16 | radiation | 20 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 979 | 33.16 | humidity | 60 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 983 | 33.16 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |