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Os06g0255700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : DEAD/DEAH box helicase, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.6 (0.0155) R2 : 0.189
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.336 (0.0326) R2dN8 : 0.244 R2N8 : 0.189
σ : 0.292
deviance : 39.01
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
23.1 0.226 10.6 -0.138 0.45 -0.429 0.0497 -1.54 0.368 6.56 0.3706 4798 -- --
24.39 0.23 10.6 -0.0921 0.455 -0.455 0.0714 -- 0.385 6.5 1.198 5038 -- --
23.06 0.224 10.6 -0.133 0.449 -0.373 -- -1.28 0.366 6.57 0.7452 4918 -- --
24.4 0.23 10.6 -0.0891 0.451 -0.459 -- -- 0.381 6.52 1.128 5038 -- --
33.42 0.269 10.6 -0.132 -- -0.376 -- -1.38 0.379 -- 0.8513 4198 -- --
28.23 0.249 10.6 0.022 0.454 -- 0.103 -- 0.33 6.5 -- -- -- --
28.25 0.249 10.6 0.0235 0.454 -- -- -- 0.33 6.5 -- -- -- --
34.56 0.274 10.6 -0.125 -- -0.531 -- -- 0.377 -- 0.9995 2576 -- --
24.57 0.231 10.6 -- 0.452 -0.437 -- -- 0.385 6.51 1 5038 -- --
38.98 0.292 10.6 0.0348 -- -- -- -- 0.339 -- -- -- -- --
28.27 0.249 10.6 -- 0.454 -- -- -- 0.327 6.5 -- -- -- --
34.91 0.275 10.6 -- -- -0.48 -- -- 0.386 -- 1.005 2576 -- --
39.01 0.292 10.6 -- -- -- -- -- 0.336 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 22.36 precipitation 0.1 14400 > th dose dependent rect. 18 1
2 22.38 precipitation 0.1 14400 < th dose independent rect. 18 1
3 22.38 precipitation 0.1 14400 < th dose dependent rect. 18 1
4 22.39 precipitation 0.1 14400 > th dose independent rect. 18 1
5 22.46 precipitation 0.1 4320 > th dose dependent rect. 23 18
6 22.48 precipitation 0.1 14400 > th dose independent rect. 3 18
7 22.48 precipitation 0.1 14400 < th dose independent rect. 3 18
8 22.48 precipitation 0.1 4320 > th dose dependent rect. 2 15
11 22.48 precipitation 0.1 14400 < th dose dependent rect. 3 18
21 22.53 precipitation 0.1 4320 < th dose independent rect. 2 15
22 22.53 precipitation 0.1 4320 < th dose dependent rect. 2 15
24 22.54 precipitation 0.1 4320 > th dose independent rect. 2 15
27 22.54 precipitation 0.1 14400 > th dose dependent rect. 10 7
33 22.56 wind 1.0 4320 > th dose independent rect. 17 2
43 22.58 precipitation 0.1 14400 > th dose independent rect. 11 6
52 22.59 precipitation 0.1 14400 < th dose independent rect. 11 6
55 22.59 precipitation 0.1 14400 < th dose dependent rect. 11 6
63 22.61 precipitation 0.1 14400 < th dose independent rect. 16 1
67 22.61 precipitation 0.1 14400 < th dose dependent rect. 16 1
70 22.62 precipitation 0.1 14400 > th dose independent rect. 16 1
71 22.63 precipitation 0.1 14400 < th dose independent rect. 13 4
72 22.63 precipitation 0.1 14400 < th dose independent rect. 11 9
75 22.63 precipitation 0.1 14400 > th dose dependent rect. 16 1
77 22.63 precipitation 0.1 14400 > th dose dependent rect. 13 4
78 22.63 precipitation 0.1 14400 < th dose dependent rect. 13 4
81 22.63 precipitation 0.1 14400 < th dose dependent rect. 11 9
84 22.64 precipitation 0.1 14400 > th dose independent rect. 13 4
85 22.64 precipitation 0.1 14400 > th dose independent rect. 11 9
122 22.68 precipitation 0.1 14400 > th dose independent sin 0 NA
123 22.68 precipitation 0.1 14400 < th dose independent sin 0 NA
128 22.68 precipitation 0.1 4320 < th dose independent rect. 23 21
129 22.68 precipitation 0.1 14400 < th dose dependent sin 0 NA
131 22.68 precipitation 0.1 4320 < th dose dependent rect. 23 21
135 22.69 precipitation 0.1 4320 > th dose independent rect. 23 21
167 22.71 precipitation 0.1 4320 > th dose dependent rect. 18 23
176 22.73 precipitation 0.1 14400 < th dose independent rect. 15 5
183 22.73 precipitation 0.1 14400 < th dose dependent rect. 15 5
191 22.74 precipitation 0.1 14400 > th dose independent rect. 16 4
203 22.74 precipitation 0.1 14400 > th dose dependent rect. 4 13
205 22.75 precipitation 0.1 4320 > th dose independent sin 3 NA
206 22.75 precipitation 0.1 4320 < th dose independent sin 3 NA
218 22.75 precipitation 0.1 4320 < th dose dependent sin 3 NA
219 22.75 precipitation 0.1 14400 > th dose dependent rect. 3 17
238 22.77 precipitation 0.1 14400 > th dose dependent rect. 22 22
247 22.78 precipitation 0.1 4320 > th dose dependent sin 4 NA
273 22.80 precipitation 0.1 14400 > th dose independent rect. 7 23
274 22.80 precipitation 0.1 14400 > th dose independent rect. 9 23
275 22.80 precipitation 0.1 14400 > th dose independent rect. 11 23
277 22.80 precipitation 0.1 14400 < th dose independent rect. 7 23
278 22.80 precipitation 0.1 14400 < th dose independent rect. 9 23
279 22.80 precipitation 0.1 14400 < th dose independent rect. 11 23
290 22.80 precipitation 0.1 14400 < th dose dependent rect. 7 23
291 22.80 precipitation 0.1 14400 < th dose dependent rect. 9 23
292 22.80 precipitation 0.1 14400 < th dose dependent rect. 11 23
293 22.81 precipitation 0.1 14400 > th dose independent no NA NA
294 22.81 precipitation 0.1 14400 < th dose independent no NA NA
296 22.81 precipitation 0.1 14400 > th dose independent rect. 9 21
297 22.81 precipitation 0.1 14400 > th dose independent rect. 13 21
298 22.81 precipitation 0.1 14400 < th dose independent rect. 9 21
299 22.81 precipitation 0.1 14400 < th dose independent rect. 11 21
310 22.81 precipitation 0.1 14400 > th dose independent rect. 15 23
311 22.81 precipitation 0.1 14400 < th dose independent rect. 15 23
312 22.81 precipitation 0.1 14400 < th dose dependent no NA NA
315 22.81 precipitation 0.1 14400 < th dose dependent rect. 9 21
316 22.81 precipitation 0.1 14400 < th dose dependent rect. 11 21
322 22.81 precipitation 0.1 14400 < th dose dependent rect. 15 23
371 22.83 precipitation 0.1 4320 > th dose dependent rect. 18 13
417 22.85 precipitation 0.1 14400 > th dose dependent sin 2 NA
467 22.89 precipitation 0.1 14400 > th dose independent rect. 15 19
468 22.89 precipitation 0.1 14400 < th dose independent rect. 15 19
488 22.89 precipitation 0.1 14400 < th dose dependent rect. 15 19
518 22.91 wind 1.0 4320 < th dose independent rect. 18 1
522 22.91 precipitation 0.1 14400 > th dose independent rect. 15 17
549 22.92 precipitation 0.1 4320 > th dose independent rect. 18 23
567 22.93 precipitation 0.1 4320 < th dose independent rect. 18 23
575 22.93 precipitation 0.1 4320 < th dose dependent rect. 18 23
584 22.94 precipitation 0.1 4320 > th dose dependent sin 9 NA
593 22.94 precipitation 0.1 14400 > th dose dependent rect. 2 22
636 22.96 precipitation 0.1 14400 > th dose dependent rect. 9 23
637 22.96 precipitation 0.1 14400 > th dose dependent rect. 11 23
638 22.96 precipitation 0.1 14400 > th dose dependent rect. 13 23
645 22.97 precipitation 0.1 14400 > th dose dependent no NA NA
647 22.97 precipitation 0.1 14400 > th dose dependent rect. 13 21
654 22.97 precipitation 0.1 14400 > th dose dependent rect. 7 23
656 22.97 precipitation 0.1 14400 > th dose dependent rect. 15 23
661 22.98 precipitation 0.1 14400 > th dose independent rect. 7 18
672 22.98 precipitation 0.1 14400 > th dose dependent rect. 13 19
694 22.99 precipitation 0.1 14400 < th dose independent rect. 7 18
710 22.99 precipitation 0.1 14400 < th dose dependent rect. 7 18
778 23.02 precipitation 0.1 14400 > th dose independent rect. 9 16
779 23.02 precipitation 0.1 14400 < th dose independent rect. 9 16
796 23.02 precipitation 0.1 14400 < th dose dependent rect. 9 16
804 23.03 precipitation 0.1 4320 < th dose independent rect. 3 11
825 23.03 precipitation 0.1 4320 < th dose dependent rect. 3 11
835 23.04 precipitation 0.1 4320 > th dose independent rect. 3 11
878 23.06 humidity 80.0 14400 > th dose independent rect. 10 1
909 23.08 humidity 90.0 14400 > th dose independent rect. 19 1
936 23.09 humidity 60.0 14400 > th dose independent rect. 15 5
956 23.09 humidity 60.0 14400 > th dose independent rect. 15 17
993 23.10 precipitation 0.1 14400 > th dose dependent rect. 15 19