BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0243600 Os08g0243600|AK101443
(240 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0243600 Haloacid dehalogenase-like hydrolase domain co... 496 e-141
Os10g0464400 Haloacid dehalogenase/epoxide hydrolase family... 168 4e-42
Os10g0209300 Haloacid dehalogenase/epoxide hydrolase family... 102 2e-22
Os01g0757900 Haloacid dehalogenase/epoxide hydrolase family... 95 4e-20
>Os08g0243600 Haloacid dehalogenase-like hydrolase domain containing protein
Length = 240
Score = 496 bits (1278), Expect = e-141, Method: Compositional matrix adjust.
Identities = 240/240 (100%), Positives = 240/240 (100%)
Query: 1 MASAADEGNAAAPRAAVSHVIFDMDGLLLDTEGFYTEVQEKILARYGKVFDWSLKAKMMG 60
MASAADEGNAAAPRAAVSHVIFDMDGLLLDTEGFYTEVQEKILARYGKVFDWSLKAKMMG
Sbjct: 1 MASAADEGNAAAPRAAVSHVIFDMDGLLLDTEGFYTEVQEKILARYGKVFDWSLKAKMMG 60
Query: 61 KKATESARIFVDECGLDGLLTPEQFLEERESMLQELFPSCAVLPGVLRLIHHLHANGVPM 120
KKATESARIFVDECGLDGLLTPEQFLEERESMLQELFPSCAVLPGVLRLIHHLHANGVPM
Sbjct: 61 KKATESARIFVDECGLDGLLTPEQFLEERESMLQELFPSCAVLPGVLRLIHHLHANGVPM 120
Query: 121 AVATGSHKRHFALKTQNHKEMFTLMHHVVMGDDPDVKTGKPSPDIFLAAMRRFEGNIEPS 180
AVATGSHKRHFALKTQNHKEMFTLMHHVVMGDDPDVKTGKPSPDIFLAAMRRFEGNIEPS
Sbjct: 121 AVATGSHKRHFALKTQNHKEMFTLMHHVVMGDDPDVKTGKPSPDIFLAAMRRFEGNIEPS 180
Query: 181 NCLVFEDAPSGVAAAKNAGMYAVMVPDSRLDVSYHKGADQVLSSLLDFKPGEWGLPPFTD 240
NCLVFEDAPSGVAAAKNAGMYAVMVPDSRLDVSYHKGADQVLSSLLDFKPGEWGLPPFTD
Sbjct: 181 NCLVFEDAPSGVAAAKNAGMYAVMVPDSRLDVSYHKGADQVLSSLLDFKPGEWGLPPFTD 240
>Os10g0464400 Haloacid dehalogenase/epoxide hydrolase family protein
Length = 397
Score = 168 bits (425), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/233 (41%), Positives = 136/233 (58%), Gaps = 9/233 (3%)
Query: 11 AAPRAA---VSHVIFDMDGLLLDTEGFYTEVQEKILARYGKVFDWSLKAKMMGKKATESA 67
AAP+ +SHVI D+DG LL+T+ ++V + L + GK +D K++GK E+A
Sbjct: 2 AAPKPIARLISHVILDLDGTLLNTDCVVSQVLKPFLVKNGKKWDSKKAHKLVGKTPYEAA 61
Query: 68 RIFVDECGLDGLLTPEQFLEERESMLQELFPSCAVLPGVLRLIHHLHANGVPMAVATGSH 127
+ +++ GL + E+FL M E + + LPG RLI HL +NGVP A+A+ S
Sbjct: 62 AVVLEDYGLP--YSTEEFLSMLTPMFNEQWCNIKALPGANRLIKHLKSNGVPAALASNSP 119
Query: 128 KRHFALKTQNHKEMFTLMHHVVMGDDPDVKTGKPSPDIFLAAMRRFEGNIEPSNCLVFED 187
+ + K H+ +V GD+ V+ GKPSPDIFL A +R N P NCLV ED
Sbjct: 120 RSNIDAKISCHQGWKESFSAIVGGDE--VEKGKPSPDIFLEAAKRM--NTNPPNCLVIED 175
Query: 188 APSGVAAAKNAGMYAVMVPDSRLDVSYHKGADQVLSSLLDFKPGEWGLPPFTD 240
+ GVAA K AGM+ + VP + AD+V++SLLD KP +WGLPPF+D
Sbjct: 176 SLPGVAAGKAAGMHVIAVPSVPKRTAEFSSADEVINSLLDVKPEKWGLPPFSD 228
>Os10g0209300 Haloacid dehalogenase/epoxide hydrolase family protein
Length = 329
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 87/157 (55%), Gaps = 9/157 (5%)
Query: 87 EERESMLQE---LFPSCAVLPGVLRLIHHLHANGVPMAVATGSHKRHFALKTQNHKEMFT 143
++R+ M ++ L+ + LPG RLI HL +NGVP A+A+ S + K H+
Sbjct: 10 KKRDKMRKKEIVLWCNIKALPGANRLIKHLKSNGVPAALASNSPGSNIEAKISCHQGWKE 69
Query: 144 LMHHVVMGDDPDVKTGKPSPDIFLAAMRRFEGNIEPSNCLVFEDAPSGVAAAKNAGMYAV 203
+V GD+ V+ GKPSPDIFL A +R N P NCLV ED S + K+ +
Sbjct: 70 SFSAIVGGDE--VEKGKPSPDIFLEAAKRM--NTNPPNCLVIED--SLCCSWKSCRNACI 123
Query: 204 MVPDSRLDVSYHKGADQVLSSLLDFKPGEWGLPPFTD 240
VP + AD+V++SLLD +P +WGL PF+D
Sbjct: 124 AVPSVPKRTAEFSSADEVINSLLDVRPEKWGLRPFSD 160
>Os01g0757900 Haloacid dehalogenase/epoxide hydrolase family protein
Length = 237
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 92/161 (57%), Gaps = 12/161 (7%)
Query: 11 AAPRAAVSHVIFDMDGLLLDTEGFYTEVQEKILARYGKVFDWSLKAKMMGKKATESARIF 70
PR VS VIFD+DG LLDTE +V + LA YGKV D + + +G+ ES
Sbjct: 45 TTPR--VSAVIFDLDGTLLDTERATRDVLNEFLAAYGKVPDKEKEERRLGQMYRESTTGI 102
Query: 71 VDECGLDGLLTPEQFLEERESMLQELFPSCAVLPGVLRLIHHLHANGVPMAVATGSHKR- 129
+ + GL LT E++ + + + LPGV RL+ HLH NGVP+A+A+ S +R
Sbjct: 103 IADYGLP--LTVEEYAVAIYPLYLKRWQKAKPLPGVERLVKHLHRNGVPLALASNSVRRN 160
Query: 130 --HFALKTQNHKEMFTLMHHVVMGDDPDVKTGKPSPDIFLA 168
H LK ++ K+ F+ V++G D V GKPSPD+++A
Sbjct: 161 IDHKLLKLKDWKDCFS----VILGGD-QVPRGKPSPDMWVA 196
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,625,657
Number of extensions: 355735
Number of successful extensions: 794
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 787
Number of HSP's successfully gapped: 4
Length of query: 240
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 142
Effective length of database: 11,918,829
Effective search space: 1692473718
Effective search space used: 1692473718
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)