Os10g0464400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Haloacid dehalogenase/epoxide hydrolase family protein.
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Os10g0464400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Haloacid dehalogenase/epoxide hydrolase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.63 | 0.173 | 12 | -0.785 | 0.33 | -0.333 | -0.215 | 0.177 | -0.227 | 17.7 | 10.01 | 228 | -- | -- |
| 13.75 | 0.173 | 12 | -0.781 | 0.323 | -0.329 | -0.176 | -- | -0.228 | 17.6 | 10 | 229 | -- | -- |
| 13.73 | 0.173 | 12 | -0.786 | 0.326 | -0.333 | -- | 0.141 | -0.233 | 17.7 | 10.03 | 227 | -- | -- |
| 13.79 | 0.173 | 12 | -0.783 | 0.324 | -0.335 | -- | -- | -0.23 | 17.5 | 10.02 | 214 | -- | -- |
| 16.83 | 0.192 | 12 | -0.829 | -- | -0.211 | -- | 0.107 | -0.267 | -- | 10.03 | 227 | -- | -- |
| 15.81 | 0.186 | 12 | -0.843 | 0.304 | -- | -0.0381 | -- | -0.26 | 21.6 | -- | -- | -- | -- |
| 15.81 | 0.186 | 12 | -0.841 | 0.304 | -- | -- | -- | -0.26 | 21.7 | -- | -- | -- | -- |
| 16.87 | 0.191 | 12 | -0.8 | -- | -0.262 | -- | -- | -0.254 | -- | 20.03 | 71 | -- | -- |
| 29.65 | 0.254 | 12 | -- | 0.465 | -0.485 | -- | -- | -0.133 | 16.7 | 10.06 | 260 | -- | -- |
| 21.28 | 0.216 | 12 | -0.839 | -- | -- | -- | -- | -0.261 | -- | -- | -- | -- | -- |
| 34.46 | 0.275 | 12 | -- | 0.303 | -- | -- | -- | -0.167 | 21.4 | -- | -- | -- | -- |
| 33.99 | 0.272 | 12 | -- | -- | -0.307 | -- | -- | -0.153 | -- | 20.05 | 78 | -- | -- |
| 39.83 | 0.295 | 12 | -- | -- | -- | -- | -- | -0.168 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.72 | humidity | 60 | 30 | > th | dose dependent | rect. | 6 | 14 |
| 6 | 12.87 | humidity | 80 | 90 | > th | dose independent | rect. | 6 | 13 |
| 17 | 13.15 | humidity | 80 | 270 | > th | dose independent | rect. | 4 | 15 |
| 21 | 13.19 | humidity | 80 | 90 | < th | dose independent | rect. | 9 | 9 |
| 29 | 13.24 | radiation | 20 | 270 | < th | dose dependent | rect. | 4 | 13 |
| 43 | 13.31 | radiation | 30 | 90 | < th | dose dependent | rect. | 6 | 14 |
| 49 | 13.34 | radiation | 10 | 270 | > th | dose independent | rect. | 7 | 9 |
| 71 | 13.42 | humidity | 80 | 90 | < th | dose independent | sin | 0 | NA |
| 75 | 13.43 | radiation | 10 | 270 | > th | dose independent | sin | 1 | NA |
| 98 | 13.46 | humidity | 80 | 90 | < th | dose independent | rect. | 22 | 19 |
| 108 | 13.47 | humidity | 80 | 90 | < th | dose independent | rect. | 1 | 16 |
| 115 | 13.48 | radiation | 20 | 90 | < th | dose independent | rect. | 6 | 14 |
| 123 | 13.49 | humidity | 80 | 90 | < th | dose independent | rect. | 3 | 14 |
| 139 | 13.52 | humidity | 80 | 270 | > th | dose independent | sin | 1 | NA |
| 187 | 13.58 | humidity | 70 | 270 | > th | dose dependent | rect. | 4 | 14 |
| 201 | 13.60 | radiation | 20 | 270 | < th | dose dependent | sin | 1 | NA |
| 229 | 13.62 | radiation | 20 | 10 | < th | dose independent | rect. | 6 | 16 |
| 239 | 13.63 | humidity | 70 | 90 | > th | dose dependent | sin | 23 | NA |
| 319 | 13.67 | humidity | 90 | 90 | < th | dose dependent | rect. | 9 | 8 |
| 334 | 13.68 | radiation | 40 | 270 | < th | dose dependent | rect. | 12 | 22 |
| 363 | 13.70 | radiation | 30 | 90 | < th | dose dependent | sin | 22 | NA |
| 381 | 13.72 | radiation | 10 | 270 | > th | dose independent | no | NA | NA |
| 509 | 13.76 | humidity | 90 | 30 | < th | dose dependent | rect. | 9 | 21 |
| 510 | 13.76 | humidity | 90 | 90 | < th | dose dependent | rect. | 20 | 21 |
| 512 | 13.77 | temperature | 15 | 30 | > th | dose independent | rect. | 20 | 10 |
| 554 | 13.79 | radiation | 40 | 30 | < th | dose dependent | rect. | 6 | 4 |
| 565 | 13.79 | humidity | 90 | 90 | < th | dose dependent | rect. | 22 | 19 |
| 573 | 13.80 | radiation | 20 | 30 | < th | dose independent | rect. | 6 | 19 |
| 577 | 13.80 | humidity | 60 | 30 | > th | dose dependent | rect. | 6 | 4 |
| 597 | 13.82 | radiation | 10 | 270 | < th | dose independent | rect. | 4 | 13 |
| 626 | 13.83 | humidity | 90 | 30 | < th | dose dependent | rect. | 9 | 19 |
| 678 | 13.86 | humidity | 70 | 10 | > th | dose independent | rect. | 6 | 4 |
| 690 | 13.86 | humidity | 90 | 30 | < th | dose dependent | rect. | 9 | 17 |
| 694 | 13.86 | radiation | 30 | 30 | < th | dose dependent | rect. | 6 | 19 |
| 757 | 13.90 | humidity | 70 | 10 | > th | dose independent | rect. | 6 | 8 |
| 762 | 13.90 | radiation | 20 | 10 | < th | dose independent | rect. | 6 | 10 |
| 781 | 13.90 | temperature | 15 | 10 | > th | dose dependent | rect. | 10 | 16 |
| 812 | 13.91 | temperature | 10 | 10 | > th | dose dependent | rect. | 10 | 20 |
| 820 | 13.92 | humidity | 80 | 270 | > th | dose independent | rect. | 22 | 22 |
| 873 | 13.94 | radiation | 20 | 90 | < th | dose independent | rect. | 6 | 5 |
| 877 | 13.94 | atmosphere | 1010 | 30 | < th | dose independent | rect. | 20 | 10 |
| 901 | 13.94 | humidity | 90 | 90 | < th | dose dependent | sin | 0 | NA |
| 909 | 13.94 | humidity | 90 | 30 | < th | dose dependent | rect. | 9 | 15 |
| 991 | 13.96 | radiation | 20 | 270 | < th | dose dependent | rect. | 2 | 23 |