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Os01g0757900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Haloacid dehalogenase/epoxide hydrolase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.2 (0.0436) R2 : 0.806
β1 : -3.95 (0.148) R2dD : 0.549 R2D : 0.255
β2 : 1.35 (0.0747) R2dC : 0.138 R2C : -0.133
β3 : 5.66 (0.51) R2dE : 0.618 R2E : -0.12
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 15.8 (1.23) R2dD*E : 0.799 R2D*E : -1.3
γ1 : -1.1 (0.0721) R2dN8 : 0.161 R2N8 : -0.0873
σ : 0.573
deviance : 151.42
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C
peak time of C : 2.16
E
wheather : radiation
threshold : 1.463
memory length : 6810
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 6.03
open length of G : 9.34

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
146.97 0.57 11.3 -3.92 1.35 5.62 1.21 15.7 -1.09 2.1 1.437 6787 6.02 9.05
205.85 0.673 10.8 -4.12 1.3 0.802 0.809 -- -1.04 2.16 1.437 6787 6.02 9.05
151.42 0.573 11.2 -3.95 1.35 5.66 -- 15.8 -1.1 2.16 1.463 6810 6.03 9.34
207.11 0.67 10.8 -3.98 1.3 0.485 -- -- -0.927 2.24 2.687 3474 5.77 9.87
256.15 0.745 11.3 -3.84 -- 5.83 -- 16.3 -1.09 -- 1.375 7240 6.23 9.1
207.43 0.675 10.8 -4.14 1.28 -- 0.869 -- -1.05 2.18 -- -- -- --
210.23 0.679 10.8 -4.16 1.29 -- -- -- -1.06 2.25 -- -- -- --
301.57 0.812 10.8 -4.11 -- 0.621 -- -- -1.04 -- 3.107 8217 4.38 11.2
238.16 0.719 10.5 -- 1.31 3.29 -- -- 0.277 1.97 3.269 47520 6.53 6.93
308.93 0.821 10.8 -4.11 -- -- -- -- -1.03 -- -- -- -- --
667.07 1.21 10.7 -- 1.21 -- -- -- -0.593 2.18 -- -- -- --
337.86 0.856 10.5 -- -- 3.19 -- -- 0.3 -- 3.151 47520 6.53 7.9
754.33 1.28 10.7 -- -- -- -- -- -0.57 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 155.62 radiation 1.0 14400 < th dose dependent rect. 7 2
3 155.90 humidity 90.0 14400 > th dose dependent rect. 7 8
20 157.82 humidity 90.0 14400 > th dose dependent sin 0 NA
22 158.02 radiation 1.0 14400 < th dose independent rect. 7 5
28 158.39 radiation 1.0 14400 > th dose independent rect. 7 5
32 158.56 precipitation 0.1 14400 > th dose independent rect. 5 3
38 158.81 humidity 90.0 14400 > th dose independent rect. 5 9
44 159.10 precipitation 0.1 14400 < th dose independent rect. 5 3
45 159.10 precipitation 0.1 14400 < th dose dependent rect. 5 3
50 159.20 precipitation 0.1 14400 > th dose dependent rect. 5 3
51 159.20 humidity 90.0 14400 > th dose dependent rect. 4 16
54 159.31 humidity 90.0 14400 > th dose dependent rect. 3 18
68 159.66 humidity 90.0 14400 > th dose independent rect. 6 4
69 159.67 humidity 90.0 14400 < th dose independent rect. 5 9
80 159.91 humidity 90.0 14400 < th dose independent rect. 5 5
106 160.55 precipitation 0.1 14400 > th dose independent rect. 5 9
119 160.74 precipitation 0.1 14400 < th dose independent rect. 5 9
120 160.74 precipitation 0.1 14400 < th dose dependent rect. 5 9
127 160.87 precipitation 0.1 14400 > th dose dependent rect. 5 5
138 161.19 humidity 90.0 14400 > th dose independent sin 1 NA
156 161.42 precipitation 0.1 14400 > th dose independent rect. 5 5
157 161.42 precipitation 0.1 14400 < th dose independent rect. 5 5
158 161.42 precipitation 0.1 14400 < th dose dependent rect. 5 5
177 161.82 precipitation 0.1 14400 > th dose dependent rect. 5 9
253 162.94 humidity 90.0 14400 < th dose independent rect. 8 8
276 163.20 humidity 90.0 14400 < th dose independent sin 2 NA
298 163.50 radiation 1.0 4320 < th dose dependent rect. 6 10
312 163.74 precipitation 0.1 14400 > th dose independent rect. 7 7
353 164.20 humidity 90.0 14400 < th dose independent rect. 11 3
382 164.42 humidity 90.0 14400 < th dose independent rect. 3 17
466 165.35 humidity 90.0 14400 > th dose dependent rect. 11 6
481 165.59 humidity 80.0 14400 > th dose dependent rect. 12 2
484 165.69 humidity 70.0 1440 > th dose dependent rect. 10 1
525 166.09 wind 1.0 14400 > th dose dependent rect. 2 2
559 166.49 humidity 90.0 14400 > th dose dependent rect. 19 1
563 166.55 humidity 60.0 43200 < th dose independent rect. 18 13
566 166.59 humidity 90.0 14400 > th dose independent rect. 13 1
609 167.01 wind 9.0 14400 < th dose dependent rect. 2 2
644 167.37 humidity 90.0 14400 > th dose dependent rect. 7 21
662 167.51 humidity 60.0 43200 > th dose independent rect. 18 13
668 167.54 humidity 90.0 14400 > th dose independent rect. 11 6
679 167.63 humidity 60.0 43200 < th dose dependent rect. 18 14
683 167.65 wind 3.0 14400 > th dose independent rect. 2 2
699 167.75 humidity 80.0 14400 < th dose independent rect. 13 1
732 167.91 humidity 50.0 43200 < th dose independent sin 11 NA
734 167.91 humidity 70.0 1440 > th dose dependent rect. 9 3
770 168.17 humidity 50.0 43200 < th dose independent rect. 17 17
780 168.25 humidity 90.0 14400 > th dose independent rect. 19 1
800 168.34 wind 3.0 14400 > th dose dependent rect. 24 6
820 168.44 humidity 50.0 43200 < th dose dependent rect. 15 19
825 168.48 humidity 60.0 1440 > th dose dependent rect. 23 14
830 168.52 humidity 50.0 43200 > th dose independent rect. 17 17
836 168.54 humidity 60.0 43200 < th dose dependent rect. 17 16
839 168.57 humidity 90.0 14400 > th dose dependent no NA NA
846 168.63 humidity 50.0 43200 < th dose independent rect. 15 20
869 168.69 humidity 90.0 14400 > th dose dependent rect. 15 23
894 168.78 humidity 60.0 43200 < th dose dependent rect. 18 3
906 168.81 humidity 90.0 14400 > th dose dependent rect. 13 23
920 168.85 humidity 90.0 14400 > th dose dependent rect. 19 23
945 168.95 humidity 90.0 1440 < th dose dependent rect. 22 14
960 169.03 humidity 50.0 43200 > th dose independent rect. 16 19
964 169.04 wind 3.0 14400 < th dose independent rect. 2 2
978 169.08 humidity 90.0 14400 < th dose independent rect. 19 2