BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0757900 Os01g0757900|AK105476
(237 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G21470.1 | chr4:11431284-11433197 FORWARD LENGTH=380 137 3e-33
AT4G25840.1 | chr4:13139026-13140719 FORWARD LENGTH=299 74 7e-14
AT5G57440.1 | chr5:23271518-23272900 REVERSE LENGTH=241 70 1e-12
>AT4G21470.1 | chr4:11431284-11433197 FORWARD LENGTH=380
Length = 379
Score = 137 bits (346), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 95/146 (65%)
Query: 50 SAVIFDLDGTLLDTERATRDVLNEFLAAYGKVPDKEKEERRLGQMYRESTTGIIADYGLP 109
S V+ DLDGTL++T+ D+L ++L YGK D + + +G+ E+ T I+ DY LP
Sbjct: 12 SCVLIDLDGTLINTDGVVGDILRKYLCKYGKQWDGRESLKIVGKTPVEAATTIVEDYELP 71
Query: 110 LTVEEYAVAIYPLYLKRWQKAKPLPGVERLVKHLHRNGVPLALASNSVRRNIDHXXXXXX 169
V+E+ YPL+ + K K LPG RL++HL +GVP+ALASNS R NI+
Sbjct: 72 CKVDEFNSEFYPLFSAQMDKIKSLPGANRLIRHLKCHGVPVALASNSSRANIESKISYHE 131
Query: 170 DWKDCFSVILGGDQVPRGKPSPDMWV 195
WK+CFSVI+G D+V +GKPSPD+++
Sbjct: 132 GWKECFSVIVGSDEVSKGKPSPDIFL 157
>AT4G25840.1 | chr4:13139026-13140719 FORWARD LENGTH=299
Length = 298
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 80/152 (52%), Gaps = 4/152 (2%)
Query: 49 VSAVIFDLDGTLLDTERATRDVLNEFLAAYGKVPDKEKEERRLGQMYRESTTGIIADYGL 108
++ VIFD+DG LLDTE+ +V + LA Y K D + + +G+ E+ + + G+
Sbjct: 71 ITHVIFDMDGLLLDTEKFYTEVQEKILARYNKTFDWSLKAKMMGRKAIEAARLFVDESGI 130
Query: 109 --PLTVEEYAVAIYPLYLKRWQKAKPLPGVERLVKHLHRNGVPLALASNSVRRNIDHXXX 166
L+ E++ V + + + +PG RL++HLH G+P+ +A+ + R+ D
Sbjct: 131 SDSLSAEDFIVERESMLQDLFPTSDLMPGASRLLRHLHGKGIPICIATGTHTRHFDLKTQ 190
Query: 167 XXXDWKDCFSVILGGD--QVPRGKPSPDMWVA 196
+ ++ GD +V GKP+PD ++A
Sbjct: 191 RHRELFSLMHHVVRGDDPEVKEGKPAPDGFLA 222
>AT5G57440.1 | chr5:23271518-23272900 REVERSE LENGTH=241
Length = 240
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 80/152 (52%), Gaps = 4/152 (2%)
Query: 49 VSAVIFDLDGTLLDTERATRDVLNEFLAAYGKVPDKEKEERRLGQMYRESTTGIIADYGL 108
++ VIFD+DG LLDTE+ +V LA + K D + + +G+ E+ + + G+
Sbjct: 14 ITHVIFDMDGLLLDTEKFYTEVQEIILARFNKKFDWSLKAKMMGRKAIEAARIFVEESGI 73
Query: 109 --PLTVEEYAVAIYPLYLKRWQKAKPLPGVERLVKHLHRNGVPLALASNSVRRNIDHXXX 166
L+ E++ V + + ++ +PG RL+KHLH +P+ +A+ + R+ D
Sbjct: 74 SDSLSAEDFLVERESMLQDLFPTSELMPGASRLIKHLHVKNIPICIATGTHTRHYDLKTQ 133
Query: 167 XXXDWKDCFSVILGGD--QVPRGKPSPDMWVA 196
+ ++ GD +V +GKP+PD ++A
Sbjct: 134 RHRELFSLMHHVVRGDDPEVKQGKPAPDGFLA 165
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.140 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,109,280
Number of extensions: 162351
Number of successful extensions: 353
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 353
Number of HSP's successfully gapped: 3
Length of query: 237
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 141
Effective length of database: 8,474,633
Effective search space: 1194923253
Effective search space used: 1194923253
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)