BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0200400 Os08g0200400|AK067859
(441 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0200400 KH domain containing protein 809 0.0
Os01g0235800 KH domain containing protein 106 3e-23
Os10g0495000 KH domain containing protein 105 5e-23
Os03g0376800 KH domain containing protein 99 5e-21
Os09g0498600 KH domain containing protein 98 1e-20
>Os08g0200400 KH domain containing protein
Length = 441
Score = 809 bits (2089), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/441 (92%), Positives = 407/441 (92%)
Query: 1 MSFDNFVQITGDARAVRKALFAVSTIIYKCPSKETIPLETSVSDLPPSIIVPSELPVYPS 60
MSFDNFVQITGDARAVRKALFAVSTIIYKCPSKETIPLETSVSDLPPSIIVPSELPVYPS
Sbjct: 1 MSFDNFVQITGDARAVRKALFAVSTIIYKCPSKETIPLETSVSDLPPSIIVPSELPVYPS 60
Query: 61 SNFYSPSDAAISSGHPSLSILGSTPHVPELTVSADAHSRLPIYQSVLPVIPAYNTPKCSG 120
SNFYSPSDAAISSGHPSLSILGSTPHVPELTVSADAHSRLPIYQSVLPVIPAYNTPKCSG
Sbjct: 61 SNFYSPSDAAISSGHPSLSILGSTPHVPELTVSADAHSRLPIYQSVLPVIPAYNTPKCSG 120
Query: 121 ELVLRVLCPAXXXXXXXXXXXXXXXSIRKESGARIDVDDSKNDREESIITITSNEATDDA 180
ELVLRVLCPA SIRKESGARIDVDDSKNDREESIITITSNEATDDA
Sbjct: 121 ELVLRVLCPAGKIGLVIGKGGVTIKSIRKESGARIDVDDSKNDREESIITITSNEATDDA 180
Query: 181 KSAAVEAVLLLQSKINDDNEGKMNLRLLVPGKVIGCLIGKGGSIVNDMRSKTKAAIYISK 240
KSAAVEAVLLLQSKINDDNEGKMNLRLLVPGKVIGCLIGKGGSIVNDMRSKTKAAIYISK
Sbjct: 181 KSAAVEAVLLLQSKINDDNEGKMNLRLLVPGKVIGCLIGKGGSIVNDMRSKTKAAIYISK 240
Query: 241 GEKPRKASSSDELVEVFGEVENLRDAXXXXXXXXXXXXXXXXXXXQNSEKDGKLTVATTD 300
GEKPRKASSSDELVEVFGEVENLRDA QNSEKDGKLTVATTD
Sbjct: 241 GEKPRKASSSDELVEVFGEVENLRDALVQIVLRLRDDVLRDSVDRQNSEKDGKLTVATTD 300
Query: 301 PLYASSYPLPALLPYRQQITPLGYDHRGDIERGLEVYPHSSLYGYSSLQAIDDGYSAVSS 360
PLYASSYPLPALLPYRQQITPLGYDHRGDIERGLEVYPHSSLYGYSSLQAIDDGYSAVSS
Sbjct: 301 PLYASSYPLPALLPYRQQITPLGYDHRGDIERGLEVYPHSSLYGYSSLQAIDDGYSAVSS 360
Query: 361 YASKGYGGRPPHMEMTIPASGLSKVMGKHGTNLDNIIKISGAHIEIIESKSSRHGHVARI 420
YASKGYGGRPPHMEMTIPASGLSKVMGKHGTNLDNIIKISGAHIEIIESKSSRHGHVARI
Sbjct: 361 YASKGYGGRPPHMEMTIPASGLSKVMGKHGTNLDNIIKISGAHIEIIESKSSRHGHVARI 420
Query: 421 SGTTEQKQSAENLIKAFIMST 441
SGTTEQKQSAENLIKAFIMST
Sbjct: 421 SGTTEQKQSAENLIKAFIMST 441
>Os01g0235800 KH domain containing protein
Length = 449
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 115/462 (24%), Positives = 190/462 (41%), Gaps = 66/462 (14%)
Query: 4 DNFVQITGDARAVRKALFAVSTIIYKCPSKETIPLETSVSDLPPSIIVPSELPVYPSSNF 63
D QITG+ +VRK L V+ +++ P KE+ L S S +F
Sbjct: 24 DELCQITGELDSVRKGLNTVAQLLFTHPPKESDVLGAHNSG--------------SSRSF 69
Query: 64 YSPSDAAISSGHPSLSILGSTPHVPELTVSADA----HSRLPIYQSVLPVIPAYNTPKCS 119
++ D P+L + P+V L +A H +P
Sbjct: 70 FNQPDVLPPGMQPNLHLPFQGPNVAHLPNFPEALMHGHGSVP-----------------P 112
Query: 120 GELVLRVLCPAXXXXXXXXXXXXXXXSIRKESGARIDVDDSKNDREESIITITSNEATDD 179
L R+LC + SI+ ++G I V D+ E+ I+ I+ D
Sbjct: 113 EPLTFRLLCSSDKVGGIIGKGGNNIKSIQNDTGCEIKVLDTVPKSEDRIVFISGPAHPGD 172
Query: 180 AKSAAVEAVLLLQSKI---NDDNEGKMNLRLLVPGKVIGCLIGKGGSIVNDMRSKTKAAI 236
S A A+L +Q KI ++ EG RL+V +GCL+GKGGSI+ +MR + A I
Sbjct: 173 GISPAQNAILHVQRKIVPTSNTKEGPAICRLIVSPNQVGCLLGKGGSIIAEMRKLSGAHI 232
Query: 237 YI-SKGEKPRKASSSDELVEVFGEVENLRDAXXXXXXXXXXXXXXXXXXXQNSEKDGKLT 295
+ SK + P+ +DE+V++ G E +++A ++ + +
Sbjct: 233 IVLSKDKIPKGVPENDEVVQISGASEAIQEALMQITARLRNHLFRDRMA--STVPNVQPP 290
Query: 296 VATTDPLYAS-----SYPLPALLPYRQQITPLGYDHRGDIERGLEVYPHSSLYGYSSLQA 350
DP + S P + P Q H+ I R L+ S+ + +Q
Sbjct: 291 FGLVDPQFGSYAGNHDSISPRIFPNVPQF------HKDFIGRPLDEM--SAPWTMKGMQV 342
Query: 351 IDDGYSA--VSSYASKGYGGRP----PHM------EMTIPASGLSKVMGKHGTNLDNIIK 398
+ D S + A +G GG P P + ++ +P L + G+ G L+ I +
Sbjct: 343 VGDPISLPDIPGMAHRGMGGFPGPGQPSIVSTITADVMVPKLVLPSLCGEDGGCLNRIRE 402
Query: 399 ISGAHIEIIESKSSRHGHVARISGTTEQKQSAENLIKAFIMS 440
SGA I + + + ISGT +Q +A +LI+AF++S
Sbjct: 403 FSGAKITVADPMGNAMDTAILISGTPDQMHAARSLIQAFVLS 444
>Os10g0495000 KH domain containing protein
Length = 762
Score = 105 bits (263), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 128/262 (48%), Gaps = 32/262 (12%)
Query: 1 MSFDNFVQITGDARAVRKALFAVSTIIYKCPSKETIPLETSVSDLPPSIIVPSELPVYPS 60
+ D VQI+G + VRKAL+ +ST +++ P K+ PLE +
Sbjct: 201 LKSDELVQISGSSSLVRKALYEISTRLHQHPRKDNPPLEEII------------------ 242
Query: 61 SNFYSPSDAAISSGHPSLSIL-GSTPHVPELTVSADAHSRLPIYQSVLPVIPAYNTPKCS 119
DA+ H + L + P +P L V D ++P+ Y++ +
Sbjct: 243 -------DASTQRKHQAPPQLPHANPMLPHLHV--DHSPQIPLLDPYRNRPLQYHSAEAE 293
Query: 120 GELVLRVLCPAXXXXXXXXXXXXXXXSIRKESGARIDVDD-SKNDREESIITITSNEATD 178
E +++LC + + +++GA + V + KN EE +I ++S E D
Sbjct: 294 -EFSIKILCASEHIGQVIGKSGGNVRQVEQQTGACVQVKEVGKNASEERLIVVSSQEIPD 352
Query: 179 DAKSAAVEAVLLLQSKINDDNEGK-MNLRLLVPGKVIGCLIGKGGSIVNDMRSKTKAAIY 237
D S +EA++LL SK++ E + RL+VP +GC+IG+GG ++ +MR +T A I
Sbjct: 353 DPVSPTIEALILLHSKVSTLAENHHLTTRLVVPSNKVGCIIGEGGKVITEMRRRTGAEIR 412
Query: 238 I-SKGEKPRKASSSDELVEVFG 258
+ SK +KP+ S +ELV+V G
Sbjct: 413 VYSKADKPKYLSFDEELVQVAG 434
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 80/175 (45%), Gaps = 29/175 (16%)
Query: 121 ELVLRVLCPAXXXXXXXXXXXXXXXSIRKESGARIDVDDSKNDREESIITI--------- 171
E + R+LCP ++R + A+I V DS +E +I I
Sbjct: 45 ETIYRILCPVKKIGSVLGRGGDIVKALRDTTKAKIRVADSIPGADERVIIIFNYSSQTEE 104
Query: 172 ----TSNEATDDAK--SAAVEAVLLLQSKINDD--------NEGKMNL-----RLLVPGK 212
S + +D K A +A+L + KI D +E N+ R+LVPG
Sbjct: 105 AAQNISTDGFEDMKPHCFAQDALLKIHDKIAADEDLHAGIVHEKSENVDDVIARILVPGN 164
Query: 213 VIGCLIGKGGSIVNDMRSKTKAAIYISKGEK-PRKASSSDELVEVFGEVENLRDA 266
+GCL+GKGGSI+ +R+ T A I + E P+ A SDELV++ G +R A
Sbjct: 165 QVGCLLGKGGSIIQQLRNDTGAGIRVLPSENLPQCALKSDELVQISGSSSLVRKA 219
>Os03g0376800 KH domain containing protein
Length = 542
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 84/273 (30%), Positives = 130/273 (47%), Gaps = 34/273 (12%)
Query: 1 MSFDNFVQITGDARAVRKALFAVSTIIYKCPSKETIPLETSVSDLPPSIIVPSELPVYPS 60
+S D +QI+GD+ VRKAL VS+ ++ PS+ L +S++ P
Sbjct: 184 ISGDELLQISGDSTVVRKALLQVSSRLHDNPSRSQHLLASSMTQ-----------PYPVG 232
Query: 61 SNFYSPSDAAISSGHPSLSILGSTPHVPELTVSADAHSRLP-IYQSVLPVIPAYNTPKCS 119
S+ S S A + P +S G D P IYQ +
Sbjct: 233 SHLGSSSTAPVVGITPLISSYGG--------YKGDVAGDWPSIYQ-------PRREESSA 277
Query: 120 GELVLRVLCPAXXXXXXXXXXXXXXXSIRKESGARIDVDDSKNDREESIITITSNEATDD 179
E LR+LC A IR+ESGA I VD S N ++ IIT+++ E +D
Sbjct: 278 KEFSLRLLCAASNVGGVIGKGGGIIKQIRQESGAFIKVD-SSNTEDDCIITVSAKEFFED 336
Query: 180 AKSAAVEAVLLLQSKINDDNEGKMNL-----RLLVPGKVIGCLIGKGGSIVNDMRSKTKA 234
S + A + LQ + ++ + + + RLLV IGCLIGKGGSI+ ++R ++A
Sbjct: 337 PVSPTINAAVHLQPRCSEKTDPESAIPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRA 396
Query: 235 AIYI-SKGEKPRKASSSDELVEVFGEVENLRDA 266
I I SK P+ A+ +E+V++ G+++ +R A
Sbjct: 397 NIRILSKENVPKVAAEDEEMVQISGDLDVVRHA 429
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 82/164 (50%), Gaps = 18/164 (10%)
Query: 121 ELVLRVLCPAXXXXXXXXXXXXXXXSIRKESGARIDVDDSKNDREESIITITSNEA---- 176
+ V R LCP+ +R ++ A+I + +S + +E +ITI S+
Sbjct: 39 DTVYRYLCPSRKIGSIIGRGGEIAKQMRADTQAKIRIGESVSGCDERVITIFSSSRETNT 98
Query: 177 ---TDDAKSAAVEAVLLLQSK--INDD------NEG--KMNLRLLVPGKVIGCLIGKGGS 223
+D A +A+ + K I+DD +EG ++ +RLLVP IGC+IGKGG
Sbjct: 99 LVDAEDKVCPAQDALFRVHEKLSIDDDIGNEESDEGLAQVTVRLLVPSDQIGCIIGKGGH 158
Query: 224 IVNDMRSKTKAAIYISKGEK-PRKASSSDELVEVFGEVENLRDA 266
I+ +RS T A I + E P A S DEL+++ G+ +R A
Sbjct: 159 IIQGIRSDTGAHIRVLSNENLPACAISGDELLQISGDSTVVRKA 202
>Os09g0498600 KH domain containing protein
Length = 398
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 88/150 (58%), Gaps = 4/150 (2%)
Query: 121 ELVLRVLCPAXXXXXXXXXXXXXXXSIRKESGARIDVDDSKNDREESIITITSNEATDDA 180
E+V R++C +++ E+GA I + + +D EE +I I+++E ++
Sbjct: 25 EIVFRMICLNEMVGSIIGKGGSTIRALQSETGASIKIIEPNSDSEERVIVISAHENSEMM 84
Query: 181 KSAAVEAVLLLQSKIND---DNEGKMNLRLLVPGKVIGCLIGKGGSIVNDMRSKTKAAIY 237
S A +AVL + S+I++ D + RLLVP + IGCL+GKGGSI+ +MR T A I
Sbjct: 85 HSPAQDAVLRVHSRISESSMDKSSAVTARLLVPSQHIGCLLGKGGSIIAEMRKITGAGIR 144
Query: 238 ISKGEK-PRKASSSDELVEVFGEVENLRDA 266
I E+ PR A +DELV+V G ++++DA
Sbjct: 145 IFGNEQIPRCAQRNDELVQVTGSFQSIQDA 174
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.130 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,660,390
Number of extensions: 553748
Number of successful extensions: 1306
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1287
Number of HSP's successfully gapped: 7
Length of query: 441
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 337
Effective length of database: 11,605,545
Effective search space: 3911068665
Effective search space used: 3911068665
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 157 (65.1 bits)