Os10g0495000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : KH domain containing protein.
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Os10g0495000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : KH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.67 | 0.208 | 11.8 | 0.586 | 0.527 | 0.345 | -0.11 | 0.69 | 0.366 | 2.4 | 21.43 | 1674 | -- | -- |
| 20.76 | 0.212 | 11.8 | 0.42 | 0.508 | 0.285 | -0.0983 | -- | 0.321 | 2.33 | 21.4 | 1784 | -- | -- |
| 19.71 | 0.207 | 11.8 | 0.59 | 0.527 | 0.347 | -- | 0.694 | 0.366 | 2.4 | 21.46 | 1676 | -- | -- |
| 20.77 | 0.212 | 11.8 | 0.401 | 0.524 | 0.297 | -- | -- | 0.325 | 2.43 | 21.4 | 1734 | -- | -- |
| 34.99 | 0.276 | 11.8 | 0.543 | -- | 0.401 | -- | 0.598 | 0.348 | -- | 21.7 | 2503 | -- | -- |
| 23.3 | 0.226 | 11.8 | 0.532 | 0.524 | -- | -0.148 | -- | 0.41 | 2.39 | -- | -- | -- | -- |
| 23.38 | 0.226 | 11.8 | 0.536 | 0.524 | -- | -- | -- | 0.411 | 2.39 | -- | -- | -- | -- |
| 35.45 | 0.277 | 11.8 | 0.43 | -- | 0.335 | -- | -- | 0.319 | -- | 21.84 | 1090 | -- | -- |
| 23.15 | 0.224 | 11.8 | -- | 0.521 | 0.511 | -- | -- | 0.237 | 2.46 | 20.05 | 6048 | -- | -- |
| 39.61 | 0.294 | 11.8 | 0.559 | -- | -- | -- | -- | 0.424 | -- | -- | -- | -- | -- |
| 30.96 | 0.26 | 11.8 | -- | 0.534 | -- | -- | -- | 0.352 | 2.4 | -- | -- | -- | -- |
| 38.67 | 0.29 | 11.8 | -- | -- | 0.536 | -- | -- | 0.243 | -- | 20.1 | 6808 | -- | -- |
| 47.84 | 0.323 | 11.8 | -- | -- | -- | -- | -- | 0.362 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.51 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 2 | 18.57 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 3 | 4 |
| 3 | 18.60 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 6 |
| 4 | 18.60 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 8 |
| 11 | 18.64 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 7 |
| 23 | 18.71 | wind | 3.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 26 | 18.72 | wind | 3.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 38 | 18.77 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 7 |
| 45 | 18.79 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 47 | 18.79 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 48 | 18.80 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 51 | 18.80 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 57 | 18.82 | wind | 3.0 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 128 | 18.95 | wind | 3.0 | 14400 | < th | dose dependent | sin | 8 | NA |
| 133 | 18.96 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 10 |
| 140 | 18.97 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 142 | 18.97 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 11 |
| 147 | 18.97 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 11 |
| 150 | 18.98 | wind | 9.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 173 | 19.01 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 183 | 19.02 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 200 | 19.05 | wind | 9.0 | 14400 | < th | dose independent | rect. | 7 | 4 |
| 213 | 19.06 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 12 |
| 232 | 19.10 | wind | 3.0 | 14400 | < th | dose independent | sin | 9 | NA |
| 233 | 19.10 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 237 | 19.10 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 262 | 19.13 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 280 | 19.14 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 6 |
| 302 | 19.16 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 384 | 19.25 | wind | 3.0 | 14400 | > th | dose independent | sin | 8 | NA |
| 448 | 19.31 | wind | 9.0 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 475 | 19.34 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 587 | 19.45 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 596 | 19.46 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 12 | 5 |
| 604 | 19.46 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 616 | 19.47 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 12 | 5 |
| 624 | 19.47 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 12 | 5 |
| 632 | 19.48 | temperature | 20.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 637 | 19.48 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 653 | 19.51 | temperature | 20.0 | 270 | > th | dose independent | rect. | 18 | 18 |
| 656 | 19.51 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 675 | 19.53 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 16 |
| 676 | 19.53 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 16 |
| 684 | 19.53 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 16 |
| 686 | 19.54 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 1 | NA |
| 687 | 19.54 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 1 | NA |
| 694 | 19.54 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 1 | NA |
| 734 | 19.56 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 19 | 16 |
| 737 | 19.57 | wind | 1.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 740 | 19.57 | temperature | 20.0 | 10 | > th | dose independent | rect. | 19 | 10 |
| 769 | 19.59 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 776 | 19.59 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 783 | 19.59 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 21 | 10 |
| 838 | 19.62 | wind | 1.0 | 14400 | > th | dose dependent | sin | 8 | NA |
| 878 | 19.65 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 3 | 9 |
| 907 | 19.67 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 1 | 11 |
| 939 | 19.69 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 3 | 9 |
| 950 | 19.69 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 12 | 5 |
| 994 | 19.72 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 1 |