Os08g0200400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : KH domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os08g0200400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : KH domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.42 | 0.33 | 7.85 | 1.73 | 0.0597 | -0.893 | 1.05 | 2.25 | 0.796 | 12.1 | 19.98 | 1342 | -- | -- |
| 54.66 | 0.344 | 7.91 | 1.32 | 0.0985 | -1.03 | 0.85 | -- | 0.712 | 11.4 | 13.22 | 7056 | -- | -- |
| 53.46 | 0.341 | 7.87 | 1.63 | 0.175 | -0.974 | -- | 2.04 | 0.741 | 15 | 16.2 | 1603 | -- | -- |
| 57.52 | 0.353 | 7.91 | 1.35 | 0.154 | -1.02 | -- | -- | 0.716 | 14.9 | 10.8 | 7438 | -- | -- |
| 54.41 | 0.344 | 7.87 | 1.57 | -- | -1.02 | -- | 1.71 | 0.744 | -- | 16.18 | 1339 | -- | -- |
| 71.67 | 0.397 | 7.97 | 0.8 | 0.147 | -- | 0.96 | -- | 0.434 | 12.8 | -- | -- | -- | -- |
| 75.02 | 0.406 | 7.97 | 0.838 | 0.181 | -- | -- | -- | 0.441 | 15.1 | -- | -- | -- | -- |
| 58.56 | 0.356 | 7.91 | 1.35 | -- | -1.04 | -- | -- | 0.703 | -- | 8.652 | 7009 | -- | -- |
| 84.48 | 0.428 | 8 | -- | 0.0231 | -0.451 | -- | -- | 0.336 | 14.7 | 27.9 | 1164 | -- | -- |
| 76.89 | 0.41 | 7.97 | 0.83 | -- | -- | -- | -- | 0.436 | -- | -- | -- | -- | -- |
| 93.52 | 0.452 | 7.99 | -- | 0.164 | -- | -- | -- | 0.348 | 15.1 | -- | -- | -- | -- |
| 84.51 | 0.428 | 8 | -- | -- | -0.484 | -- | -- | 0.312 | -- | 27.6 | 1167 | -- | -- |
| 95.06 | 0.455 | 7.99 | -- | -- | -- | -- | -- | 0.344 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.90 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 2 | 47.00 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 6 | 47.20 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 6 |
| 59 | 48.20 | temperature | 20 | 1440 | > th | dose dependent | sin | 18 | NA |
| 102 | 48.51 | wind | 9 | 43200 | > th | dose dependent | sin | 14 | NA |
| 139 | 48.72 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 147 | 48.74 | wind | 7 | 43200 | > th | dose dependent | rect. | 13 | 21 |
| 170 | 48.86 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 175 | 48.86 | wind | 9 | 43200 | > th | dose dependent | rect. | 13 | 19 |
| 249 | 49.08 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 252 | 49.09 | wind | 9 | 43200 | < th | dose independent | rect. | 13 | 21 |
| 292 | 49.17 | wind | 7 | 43200 | > th | dose dependent | rect. | 23 | 22 |
| 322 | 49.23 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 324 | 49.23 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 325 | 49.23 | wind | 7 | 43200 | > th | dose dependent | rect. | 2 | 19 |
| 326 | 49.24 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 352 | 49.28 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 360 | 49.29 | wind | 9 | 43200 | > th | dose independent | sin | 13 | NA |
| 396 | 49.34 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 23 |
| 397 | 49.35 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 406 | 49.36 | wind | 9 | 43200 | > th | dose independent | rect. | 13 | 21 |
| 413 | 49.36 | wind | 7 | 43200 | > th | dose dependent | rect. | 5 | 23 |
| 421 | 49.37 | wind | 7 | 43200 | > th | dose dependent | rect. | 2 | 23 |
| 423 | 49.38 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 5 |
| 426 | 49.38 | wind | 7 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 434 | 49.39 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 9 |
| 442 | 49.40 | wind | 7 | 43200 | > th | dose dependent | no | NA | NA |
| 466 | 49.43 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 467 | 49.43 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 20 |
| 493 | 49.45 | wind | 7 | 43200 | > th | dose dependent | rect. | 5 | 20 |
| 507 | 49.47 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 22 |
| 548 | 49.50 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 23 |
| 552 | 49.51 | wind | 9 | 43200 | > th | dose dependent | sin | 17 | NA |
| 580 | 49.54 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 613 | 49.57 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 667 | 49.62 | wind | 3 | 43200 | > th | dose dependent | rect. | 23 | 22 |
| 670 | 49.63 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 22 |
| 690 | 49.65 | wind | 3 | 43200 | > th | dose dependent | rect. | 2 | 19 |
| 697 | 49.66 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 705 | 49.67 | wind | 9 | 43200 | < th | dose independent | sin | 13 | NA |
| 779 | 49.73 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 793 | 49.75 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 875 | 49.81 | wind | 3 | 43200 | > th | dose dependent | rect. | 3 | 22 |
| 981 | 49.89 | wind | 3 | 43200 | > th | dose dependent | no | NA | NA |
| 990 | 49.89 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 21 |