Os01g0235800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : KH domain containing protein.
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Os01g0235800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : KH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.48 | 0.185 | 11 | 0.405 | 0.146 | 0.513 | 0.235 | -0.358 | 0.0892 | 5.15 | 80.12 | 1348 | -- | -- |
| 15.58 | 0.184 | 11 | 0.386 | 0.146 | 0.487 | 0.28 | -- | 0.083 | 4.72 | 80 | 1307 | -- | -- |
| 15.59 | 0.184 | 11 | 0.409 | 0.153 | 0.503 | -- | -0.394 | 0.0894 | 5.39 | 80.14 | 1314 | -- | -- |
| 15.73 | 0.185 | 11 | 0.381 | 0.148 | 0.487 | -- | -- | 0.0824 | 5.83 | 80 | 1359 | -- | -- |
| 16.56 | 0.19 | 11 | 0.401 | -- | 0.516 | -- | -0.383 | 0.0842 | -- | 80.76 | 1587 | -- | -- |
| 18.75 | 0.203 | 11 | 0.365 | 0.119 | -- | 0.147 | -- | 0.0523 | 5.83 | -- | -- | -- | -- |
| 18.78 | 0.203 | 11 | 0.366 | 0.121 | -- | -- | -- | 0.0519 | 6.35 | -- | -- | -- | -- |
| 16.59 | 0.19 | 11 | 0.365 | -- | 0.448 | -- | -- | 0.0772 | -- | 80.43 | 1805 | -- | -- |
| 19.46 | 0.205 | 11 | -- | 0.155 | 0.477 | -- | -- | 0.0385 | 5.55 | 80 | 1347 | -- | -- |
| 19.54 | 0.207 | 11 | 0.369 | -- | -- | -- | -- | 0.0545 | -- | -- | -- | -- | -- |
| 22.32 | 0.221 | 11 | -- | 0.126 | -- | -- | -- | 0.0111 | 6.19 | -- | -- | -- | -- |
| 19.66 | 0.207 | 11 | -- | -- | 0.49 | -- | -- | 0.124 | -- | 79.82 | 3495 | -- | -- |
| 23.14 | 0.225 | 11 | -- | -- | -- | -- | -- | 0.0135 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.34 | humidity | 80 | 720 | < th | dose independent | rect. | 19 | 2 |
| 3 | 15.43 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 3 | 6 |
| 5 | 15.49 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 22 |
| 9 | 15.52 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 20 |
| 13 | 15.53 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 18 |
| 17 | 15.53 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 20 |
| 18 | 15.53 | humidity | 90 | 720 | > th | dose dependent | rect. | 5 | 21 |
| 22 | 15.55 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 16 |
| 26 | 15.57 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 22 |
| 34 | 15.58 | humidity | 70 | 1440 | > th | dose dependent | rect. | 23 | 22 |
| 49 | 15.62 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 18 |
| 53 | 15.62 | humidity | 80 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 74 | 15.64 | humidity | 70 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 93 | 15.66 | humidity | 70 | 1440 | > th | dose dependent | no | NA | NA |
| 100 | 15.67 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 109 | 15.67 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 114 | 15.67 | humidity | 80 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 131 | 15.68 | humidity | 80 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 142 | 15.68 | humidity | 70 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 155 | 15.69 | humidity | 80 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 161 | 15.69 | humidity | 70 | 1440 | > th | dose dependent | rect. | 14 | 23 |
| 189 | 15.72 | humidity | 80 | 1440 | > th | dose independent | sin | 18 | NA |
| 222 | 15.74 | humidity | 50 | 720 | > th | dose dependent | rect. | 18 | 9 |
| 230 | 15.75 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 11 |
| 235 | 15.75 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 22 |
| 236 | 15.75 | humidity | 80 | 1440 | < th | dose independent | rect. | 19 | 22 |
| 241 | 15.75 | humidity | 80 | 1440 | < th | dose independent | rect. | 22 | 23 |
| 253 | 15.76 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 263 | 15.76 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 264 | 15.76 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 286 | 15.77 | humidity | 80 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 290 | 15.77 | humidity | 70 | 1440 | > th | dose dependent | sin | 17 | NA |
| 312 | 15.78 | humidity | 80 | 1440 | < th | dose independent | rect. | 14 | 23 |
| 323 | 15.79 | humidity | 80 | 1440 | < th | dose independent | sin | 19 | NA |
| 357 | 15.80 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 11 |
| 431 | 15.84 | humidity | 70 | 1440 | < th | dose independent | rect. | 14 | 3 |
| 527 | 15.88 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 541 | 15.89 | humidity | 70 | 1440 | > th | dose independent | rect. | 13 | 5 |
| 542 | 15.89 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 3 | 6 |
| 581 | 15.91 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 8 |
| 646 | 15.94 | humidity | 80 | 720 | > th | dose independent | rect. | 19 | 8 |
| 684 | 15.96 | humidity | 70 | 1440 | > th | dose independent | rect. | 14 | 2 |
| 695 | 15.96 | humidity | 70 | 1440 | > th | dose dependent | rect. | 14 | 7 |
| 722 | 15.97 | humidity | 70 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 747 | 15.98 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 769 | 15.99 | humidity | 80 | 1440 | > th | dose independent | rect. | 14 | 7 |
| 779 | 15.99 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 3 |
| 796 | 16.00 | humidity | 80 | 720 | > th | dose independent | rect. | 19 | 2 |
| 839 | 16.02 | humidity | 80 | 1440 | < th | dose independent | rect. | 14 | 7 |
| 869 | 16.02 | humidity | 90 | 720 | > th | dose dependent | rect. | 13 | 22 |
| 991 | 16.06 | humidity | 90 | 10 | < th | dose independent | rect. | 1 | 8 |