Os03g0376800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : KH domain containing protein.
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Os03g0376800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : KH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.02 | 0.225 | 10.6 | 0.64 | 0.167 | -1.41 | 0.936 | 0.706 | 0.341 | 0.177 | 9.881 | 12 | -- | -- |
| 23.28 | 0.226 | 10.7 | 0.535 | 0.16 | -1.41 | 0.776 | -- | 0.313 | 23.9 | 10.15 | 29 | -- | -- |
| 25.64 | 0.238 | 10.7 | 0.455 | 0.149 | -1.46 | -- | -0.449 | 0.302 | 22.8 | 9.881 | 12 | -- | -- |
| 25.7 | 0.236 | 10.7 | 0.526 | 0.176 | -1.48 | -- | -- | 0.32 | 22.5 | 8.668 | 32 | -- | -- |
| 26.82 | 0.243 | 10.7 | 0.481 | -- | -1.58 | -- | -0.438 | 0.319 | -- | 9.881 | 12 | -- | -- |
| 42.68 | 0.306 | 10.7 | 0.266 | 0.525 | -- | 0.963 | -- | 0.118 | 1.42 | -- | -- | -- | -- |
| 46.44 | 0.319 | 10.7 | 0.234 | 0.524 | -- | -- | -- | 0.113 | 1.44 | -- | -- | -- | -- |
| 26.98 | 0.242 | 10.6 | 0.545 | -- | -1.6 | -- | -- | 0.337 | -- | 10.31 | 7 | -- | -- |
| 32.19 | 0.266 | 10.7 | -- | 0.207 | -1.22 | -- | -- | 0.231 | 0.0787 | 10.01 | 40 | -- | -- |
| 63.34 | 0.372 | 10.7 | 0.254 | -- | -- | -- | -- | 0.124 | -- | -- | -- | -- | -- |
| 47.88 | 0.324 | 10.7 | -- | 0.529 | -- | -- | -- | 0.0866 | 1.46 | -- | -- | -- | -- |
| 34.25 | 0.273 | 10.7 | -- | -- | -1.36 | -- | -- | 0.256 | -- | 15.3 | 13 | -- | -- |
| 65.05 | 0.376 | 10.7 | -- | -- | -- | -- | -- | 0.0955 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.23 | temperature | 10 | 90 | > th | dose dependent | sin | 2 | NA |
| 5 | 19.43 | temperature | 30 | 30 | < th | dose dependent | sin | 1 | NA |
| 67 | 22.09 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 13 |
| 89 | 22.68 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 98 | 23.02 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 102 | 23.05 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 107 | 23.21 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 120 | 23.50 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 17 |
| 123 | 23.51 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 130 | 23.63 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 149 | 23.74 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 157 | 23.79 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 165 | 23.80 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 172 | 23.85 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 174 | 23.88 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 188 | 24.00 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 203 | 24.06 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 211 | 24.13 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 220 | 24.20 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 250 | 24.41 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 260 | 24.46 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 261 | 24.46 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 278 | 24.51 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 288 | 24.55 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 290 | 24.57 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 11 |
| 307 | 24.65 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 343 | 24.79 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 385 | 24.92 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 23 |
| 430 | 25.09 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 11 |
| 441 | 25.11 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 447 | 25.13 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 538 | 25.44 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 17 |
| 615 | 25.68 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 10 |
| 618 | 25.69 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 12 |
| 626 | 25.71 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 635 | 25.73 | temperature | 15 | 720 | > th | dose dependent | rect. | 2 | 9 |
| 693 | 25.90 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 17 |
| 702 | 25.92 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 19 |
| 756 | 26.04 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 18 |
| 786 | 26.10 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 821 | 26.17 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 839 | 26.21 | temperature | 20 | 720 | > th | dose independent | sin | 5 | NA |
| 845 | 26.23 | temperature | 20 | 720 | < th | dose independent | sin | 5 | NA |
| 852 | 26.25 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 16 |
| 924 | 26.37 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 14 |
| 933 | 26.39 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 15 |