BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0191600 Os08g0191600|AK121169
(120 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0191600 Similar to Symbiosis-related like protein 244 8e-66
Os04g0624000 Similar to Symbiosis-related like protein 230 1e-61
Os07g0512200 Similar to Symbiosis-related like protein 221 8e-59
Os11g0100100 Similar to Gamma-aminobutyric acid receptor-as... 134 1e-32
AK065550 113 2e-26
Os02g0529150 68 2e-12
>Os08g0191600 Similar to Symbiosis-related like protein
Length = 120
Score = 244 bits (624), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 120/120 (100%), Positives = 120/120 (100%)
Query: 1 MARSSFKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 60
MARSSFKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ
Sbjct: 1 MARSSFKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 60
Query: 61 FVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFGLFV 120
FVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFGLFV
Sbjct: 61 FVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFGLFV 120
>Os04g0624000 Similar to Symbiosis-related like protein
Length = 119
Score = 230 bits (587), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 113/119 (94%), Positives = 115/119 (96%)
Query: 1 MARSSFKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 60
MA+SSFKL+H LERRQAEANRIREKY DRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ
Sbjct: 1 MAKSSFKLDHTLERRQAEANRIREKYSDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 60
Query: 61 FVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFGLF 119
FVYVVRKRIKLS EKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFGL
Sbjct: 61 FVYVVRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFGLL 119
>Os07g0512200 Similar to Symbiosis-related like protein
Length = 119
Score = 221 bits (564), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 105/117 (89%), Positives = 114/117 (97%)
Query: 1 MARSSFKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 60
MAR+SFKLEHPLERRQAE+ RIREKY DRIPVIVEKA+++D+P+IDKKKYLVPADLTVGQ
Sbjct: 1 MARTSFKLEHPLERRQAESARIREKYSDRIPVIVEKADKTDVPEIDKKKYLVPADLTVGQ 60
Query: 61 FVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117
FVYVVRKRIKLS EKAIF+FVKNTLPPTA+LMSAIYEENKDEDGFLYMTYSGENTFG
Sbjct: 61 FVYVVRKRIKLSPEKAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFG 117
>Os11g0100100 Similar to Gamma-aminobutyric acid receptor-associated protein-like
2 (GABA(A) receptor-associated protein-like 2)
(Ganglioside expression factor 2) (GEF-2) (General
protein transport factor p16) (MAP1 light chain 3
related protein)
Length = 118
Score = 134 bits (338), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 63/113 (55%), Positives = 83/113 (73%), Gaps = 1/113 (0%)
Query: 6 FKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVV 65
FK E LE R E+ + YPDRIPVIVEK RS++P+++K+KYLVP ++ VGQF++++
Sbjct: 6 FKEEFTLEERAKESAAMIASYPDRIPVIVEKFSRSNLPEMEKRKYLVPCNMPVGQFIFIL 65
Query: 66 RKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDE-DGFLYMTYSGENTFG 117
R R+ LS A+F+FV NTLP TA LM ++YE KDE DGFLY+ YS E TFG
Sbjct: 66 RSRLHLSPGTALFVFVNNTLPQTAQLMGSVYESYKDEGDGFLYLCYSSEKTFG 118
>AK065550
Length = 89
Score = 113 bits (283), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 68/89 (76%), Gaps = 1/89 (1%)
Query: 30 IPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNTLPPTA 89
+ VIVE+ RS +P+++K+KYLVP D+ VGQF++++R R+ LS A+F+FV NTLP TA
Sbjct: 1 LQVIVERFSRSSLPEMEKRKYLVPCDMPVGQFIFILRSRLHLSPGIALFVFVNNTLPQTA 60
Query: 90 ALMSAIYEENKDE-DGFLYMTYSGENTFG 117
LM ++YE KDE DGFLYM YS E TFG
Sbjct: 61 QLMGSVYESYKDEDDGFLYMCYSSEKTFG 89
>Os02g0529150
Length = 87
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 49/85 (57%), Gaps = 20/85 (23%)
Query: 34 VEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMS 93
V+K RS++P+++K+K +P A+F+FV NTLP TA LM
Sbjct: 22 VDKFSRSNLPEMEKRKLHLPPGT-------------------ALFVFVNNTLPQTAQLMG 62
Query: 94 AIYEENKDE-DGFLYMTYSGENTFG 117
++YE KDE DGFLY+ YS E TFG
Sbjct: 63 SVYESYKDEGDGFLYLCYSSEKTFG 87
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.137 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,774,083
Number of extensions: 132544
Number of successful extensions: 313
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 310
Number of HSP's successfully gapped: 6
Length of query: 120
Length of database: 17,035,801
Length adjustment: 86
Effective length of query: 34
Effective length of database: 12,545,397
Effective search space: 426543498
Effective search space used: 426543498
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)