Os04g0624000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Symbiosis-related like protein.
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Os04g0624000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Symbiosis-related like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.41 | 0.263 | 12.9 | -0.267 | 0.121 | -0.801 | -0.828 | -1.04 | 0.0189 | 21.9 | 0.5405 | 248 | -- | -- |
| 32.51 | 0.266 | 12.9 | -0.242 | 0.0896 | -0.865 | -0.765 | -- | 0.0303 | 19.2 | -12.51 | 248 | -- | -- |
| 33.21 | 0.268 | 12.9 | -0.236 | 0.163 | -0.765 | -- | -0.454 | 0.0215 | 22.6 | -4.972 | 275 | -- | -- |
| 33.62 | 0.27 | 12.9 | -0.233 | 0.15 | -0.742 | -- | -- | 0.0216 | 23.2 | -9.26 | 255 | -- | -- |
| 33.79 | 0.271 | 12.9 | -0.235 | -- | -0.864 | -- | -0.411 | 0.0242 | -- | -40.96 | 210 | -- | -- |
| 40.31 | 0.298 | 12.9 | -0.263 | 0.593 | -- | 0.0324 | -- | -0.0307 | 1.63 | -- | -- | -- | -- |
| 40.31 | 0.297 | 12.9 | -0.265 | 0.593 | -- | -- | -- | -0.0309 | 1.62 | -- | -- | -- | -- |
| 34.18 | 0.272 | 12.9 | -0.237 | -- | -0.858 | -- | -- | 0.0254 | -- | -42.6 | 210 | -- | -- |
| 35.08 | 0.276 | 12.9 | -- | 0.143 | -0.761 | -- | -- | 0.0489 | 22.8 | -7.408 | 259 | -- | -- |
| 61.8 | 0.367 | 12.9 | -0.241 | -- | -- | -- | -- | -0.0178 | -- | -- | -- | -- | -- |
| 42.15 | 0.304 | 12.9 | -- | 0.589 | -- | -- | -- | -0.00142 | 1.61 | -- | -- | -- | -- |
| 35.66 | 0.278 | 12.9 | -- | -- | -0.858 | -- | -- | 0.0522 | -- | -37.76 | 211 | -- | -- |
| 63.33 | 0.371 | 12.9 | -- | -- | -- | -- | -- | 0.00889 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.76 | temperature | 15 | 30 | > th | dose dependent | rect. | 9 | 21 |
| 6 | 28.23 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 21 |
| 58 | 29.67 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 21 |
| 80 | 30.15 | temperature | 20 | 30 | > th | dose dependent | rect. | 9 | 14 |
| 112 | 30.51 | temperature | 25 | 270 | > th | dose dependent | sin | 5 | NA |
| 116 | 30.53 | temperature | 20 | 30 | > th | dose dependent | rect. | 9 | 9 |
| 130 | 30.65 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 8 |
| 199 | 31.08 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 19 |
| 202 | 31.10 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 14 |
| 208 | 31.14 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 21 |
| 217 | 31.19 | temperature | 30 | 90 | < th | dose independent | sin | 3 | NA |
| 244 | 31.30 | radiation | 1 | 270 | > th | dose dependent | sin | 1 | NA |
| 245 | 31.30 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 12 |
| 257 | 31.33 | radiation | 1 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 258 | 31.33 | radiation | 40 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 270 | 31.37 | radiation | 1 | 270 | > th | dose dependent | rect. | 7 | 10 |
| 278 | 31.37 | radiation | 1 | 270 | > th | dose dependent | rect. | 7 | 23 |
| 309 | 31.43 | temperature | 20 | 90 | > th | dose dependent | sin | 23 | NA |
| 320 | 31.46 | temperature | 25 | 90 | > th | dose dependent | sin | 1 | NA |
| 343 | 31.49 | radiation | 1 | 270 | > th | dose dependent | no | NA | NA |
| 452 | 31.55 | radiation | 30 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 491 | 31.63 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 12 |
| 534 | 31.73 | radiation | 20 | 270 | < th | dose independent | rect. | 12 | 22 |
| 545 | 31.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 553 | 31.79 | radiation | 20 | 270 | < th | dose independent | rect. | 3 | 12 |
| 556 | 31.79 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 15 |
| 583 | 31.84 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 13 |
| 595 | 31.86 | radiation | 20 | 270 | < th | dose independent | rect. | 3 | 8 |
| 603 | 31.87 | radiation | 40 | 270 | < th | dose dependent | no | NA | NA |
| 609 | 31.87 | radiation | 40 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 662 | 31.94 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 22 |
| 762 | 32.09 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 12 |
| 813 | 32.15 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 913 | 32.16 | radiation | 40 | 270 | < th | dose dependent | sin | 3 | NA |
| 942 | 32.18 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 948 | 32.18 | radiation | 40 | 10 | < th | dose dependent | rect. | 6 | 18 |
| 977 | 32.20 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |