Os08g0191600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Symbiosis-related like protein.
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Os08g0191600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Symbiosis-related like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.16 | 0.17 | 13.9 | 0.151 | 0.551 | -0.401 | -0.474 | -0.914 | 0.175 | 22.6 | 14.77 | 128 | -- | -- |
| 14.06 | 0.175 | 13.9 | 0.151 | 0.572 | -0.326 | -0.146 | -- | 0.175 | 22.6 | 13.84 | 156 | -- | -- |
| 13.76 | 0.173 | 13.9 | 0.159 | 0.568 | -0.368 | -- | -0.496 | 0.172 | 22.7 | 16.02 | 139 | -- | -- |
| 14.14 | 0.175 | 13.9 | 0.155 | 0.577 | -0.313 | -- | -- | 0.172 | 22.7 | 14.4 | 156 | -- | -- |
| 20.72 | 0.212 | 13.9 | 0.171 | -- | -0.886 | -- | -0.243 | 0.185 | -- | -3.724 | 48 | -- | -- |
| 15.61 | 0.185 | 13.9 | 0.15 | 0.685 | -- | -0.12 | -- | 0.156 | 23.2 | -- | -- | -- | -- |
| 15.67 | 0.185 | 13.9 | 0.155 | 0.686 | -- | -- | -- | 0.157 | 23.2 | -- | -- | -- | -- |
| 20.85 | 0.213 | 13.9 | 0.154 | -- | -0.876 | -- | -- | 0.18 | -- | -48.48 | 48 | -- | -- |
| 14.76 | 0.179 | 13.9 | -- | 0.581 | -0.322 | -- | -- | 0.154 | 22.8 | 15.93 | 140 | -- | -- |
| 45.06 | 0.314 | 13.9 | 0.171 | -- | -- | -- | -- | 0.163 | -- | -- | -- | -- | -- |
| 16.3 | 0.189 | 13.9 | -- | 0.687 | -- | -- | -- | 0.139 | 23.2 | -- | -- | -- | -- |
| 21.48 | 0.216 | 13.9 | -- | -- | -0.879 | -- | -- | 0.163 | -- | -67.06 | 48 | -- | -- |
| 45.84 | 0.316 | 13.9 | -- | -- | -- | -- | -- | 0.144 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.88 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 2 | 12.95 | radiation | 20 | 270 | < th | dose independent | rect. | 23 | 15 |
| 7 | 13.02 | radiation | 40 | 270 | < th | dose dependent | rect. | 23 | 15 |
| 22 | 13.11 | radiation | 40 | 90 | < th | dose dependent | rect. | 21 | 22 |
| 24 | 13.13 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 26 | 13.14 | temperature | 30 | 90 | < th | dose independent | sin | 6 | NA |
| 38 | 13.18 | radiation | 30 | 90 | < th | dose independent | sin | 5 | NA |
| 48 | 13.19 | radiation | 30 | 90 | < th | dose independent | rect. | 23 | 20 |
| 61 | 13.23 | radiation | 40 | 270 | < th | dose dependent | sin | 6 | NA |
| 67 | 13.24 | radiation | 40 | 90 | < th | dose dependent | sin | 4 | NA |
| 70 | 13.24 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 20 |
| 72 | 13.25 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 74 | 13.25 | radiation | 10 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 75 | 13.26 | radiation | 10 | 270 | > th | dose dependent | sin | 7 | NA |
| 80 | 13.26 | radiation | 40 | 270 | < th | dose dependent | rect. | 21 | 20 |
| 85 | 13.27 | radiation | 30 | 90 | < th | dose independent | rect. | 21 | 22 |
| 90 | 13.27 | radiation | 10 | 90 | > th | dose dependent | rect. | 6 | 10 |
| 113 | 13.27 | radiation | 40 | 90 | < th | dose dependent | rect. | 23 | 20 |
| 125 | 13.29 | radiation | 10 | 90 | > th | dose dependent | sin | 2 | NA |
| 145 | 13.30 | radiation | 10 | 90 | > th | dose dependent | no | NA | NA |
| 178 | 13.30 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 18 |
| 506 | 13.36 | radiation | 10 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 520 | 13.37 | radiation | 40 | 10 | < th | dose independent | sin | 7 | NA |
| 528 | 13.38 | temperature | 30 | 90 | > th | dose independent | rect. | 8 | 7 |
| 609 | 13.43 | radiation | 1 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 634 | 13.46 | temperature | 30 | 90 | > th | dose independent | sin | 6 | NA |
| 698 | 13.48 | radiation | 20 | 270 | > th | dose independent | sin | 7 | NA |
| 701 | 13.48 | radiation | 40 | 10 | > th | dose independent | rect. | 13 | 23 |
| 747 | 13.50 | radiation | 20 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 789 | 13.51 | radiation | 40 | 10 | < th | dose dependent | sin | 4 | NA |
| 834 | 13.52 | radiation | 40 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 868 | 13.54 | radiation | 40 | 90 | < th | dose dependent | no | NA | NA |
| 979 | 13.56 | radiation | 40 | 10 | < th | dose dependent | rect. | 7 | 23 |