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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0100100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Gamma-aminobutyric acid receptor-associated protein-like 2 (GABA(A) receptor-associated protein-like 2) (Ganglioside expression factor 2) (GEF-2) (General protein transport factor p16) (MAP1 light chain 3 related protein).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.87 (0.0273) R2 : 0.834
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.81 (0.131) R2dE : 0.0742 R2E : -0.312
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -2.81 (0.0589) R2dN8 : 1.15 R2N8 : 0.759
σ : 0.509
deviance : 119.52
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 6.757
memory length : 46
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
93.1 0.453 5.88 0.504 0.231 1.79 -1.79 -1.23 -2.79 2.1 8.767 16 -- --
93.97 0.451 5.86 0.678 0.247 1.8 -1.48 -- -2.75 2.25 6.264 16 -- --
101.07 0.468 5.84 0.84 0.298 1.86 -- 0.855 -2.71 2.9 -1.857 16 -- --
101.67 0.47 5.86 0.702 0.287 1.89 -- -- -2.75 3.28 14.38 16 -- --
104.27 0.476 5.83 0.891 -- 1.54 -- 0.846 -2.67 -- 3.161 16 -- --
124.2 0.522 5.8 1.02 0.264 -- 1.7 -- -2.5 13.8 -- -- -- --
135.41 0.545 5.8 1.07 0.265 -- -- -- -2.49 13.5 -- -- -- --
104.83 0.477 5.85 0.773 -- 1.56 -- -- -2.7 -- 9.145 16 -- --
113.22 0.496 5.88 -- 0.397 2.22 -- -- -2.87 3.55 11.86 46 -- --
139.71 0.552 5.8 1.06 -- -- -- -- -2.49 -- -- -- -- --
165.75 0.602 5.82 -- 0.246 -- -- -- -2.61 13.3 -- -- -- --
119.52 0.509 5.87 -- -- 1.81 -- -- -2.81 -- 6.757 46 -- --
169.48 0.608 5.83 -- -- -- -- -- -2.61 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 89.38 temperature 30 30 < th dose dependent rect. 3 23
3 91.81 temperature 15 90 > th dose dependent rect. 24 23
4 93.21 temperature 10 10 > th dose dependent no NA NA
11 94.12 temperature 15 10 > th dose dependent rect. 24 23
13 94.39 temperature 10 270 > th dose dependent rect. 22 23
17 95.06 temperature 30 90 < th dose dependent rect. 7 23
20 95.43 temperature 10 720 > th dose dependent rect. 19 21
21 95.44 temperature 10 720 > th dose dependent rect. 15 22
32 95.87 temperature 30 10 < th dose dependent rect. 21 23
34 95.90 temperature 15 270 > th dose dependent rect. 17 23
35 95.90 temperature 30 10 < th dose dependent rect. 7 23
44 96.26 temperature 15 90 > th dose dependent rect. 4 23
47 96.29 temperature 30 10 < th dose dependent no NA NA
51 96.45 temperature 10 720 > th dose dependent rect. 22 18
52 96.46 temperature 30 10 < th dose dependent rect. 11 23
54 96.51 temperature 30 10 < th dose dependent rect. 15 23
58 96.61 temperature 30 30 < th dose dependent rect. 13 23
65 96.78 temperature 30 10 < th dose dependent rect. 17 23
72 96.88 temperature 30 10 < th dose dependent rect. 9 23
75 96.92 temperature 30 10 < th dose dependent rect. 23 23
80 96.97 temperature 25 1440 < th dose dependent rect. 9 1
93 97.25 temperature 25 1440 < th dose dependent rect. 8 3
100 97.30 temperature 15 10 > th dose dependent rect. 11 23
101 97.31 temperature 25 1440 < th dose dependent rect. 6 6
105 97.31 temperature 10 720 > th dose dependent rect. 11 23
115 97.45 temperature 10 720 > th dose dependent rect. 24 16
130 97.58 temperature 30 90 < th dose dependent rect. 19 23
131 97.59 temperature 15 10 > th dose dependent rect. 22 23
136 97.61 temperature 30 720 < th dose dependent rect. 23 19
142 97.67 temperature 10 720 > th dose dependent rect. 11 21
150 97.71 temperature 10 720 > th dose dependent rect. 9 22
158 97.75 temperature 15 10 > th dose dependent rect. 15 23
187 97.97 temperature 15 10 > th dose dependent rect. 9 23
193 98.01 temperature 30 720 < th dose dependent rect. 1 18
199 98.09 temperature 30 10 < th dose dependent rect. 19 23
229 98.21 temperature 25 1440 < th dose dependent sin 4 NA
235 98.23 temperature 25 720 < th dose dependent rect. 3 20
254 98.31 temperature 25 1440 < th dose dependent rect. 22 15
314 98.43 temperature 15 10 > th dose dependent rect. 13 23
363 98.57 temperature 25 720 < th dose dependent sin 0 NA
388 98.62 temperature 10 720 > th dose dependent rect. 4 23
454 98.79 temperature 15 90 > th dose dependent rect. 13 23
512 98.89 temperature 25 1440 < th dose dependent no NA NA
513 98.89 temperature 10 1440 > th dose dependent rect. 23 1
550 98.97 temperature 10 720 > th dose dependent sin 5 NA
555 98.98 temperature 30 1440 < th dose dependent rect. 23 1
598 99.08 temperature 10 1440 > th dose dependent rect. 22 14