BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0150200 Os08g0150200|AK065399
(174 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0150200 Conserved hypothetical protein 361 e-100
Os08g0149100 Conserved hypothetical protein 174 4e-44
Os08g0149050 Conserved hypothetical protein 142 2e-34
Os08g0150500 Cyclin-like F-box domain containing protein 86 1e-17
Os08g0150600 Conserved hypothetical protein 83 9e-17
Os08g0197500 Cyclin-like F-box domain containing protein 64 4e-11
>Os08g0150200 Conserved hypothetical protein
Length = 174
Score = 361 bits (926), Expect = e-100, Method: Compositional matrix adjust.
Identities = 174/174 (100%), Positives = 174/174 (100%)
Query: 1 TYHQWNQLQFTLNRFSFGHSDVDCTILSALSNAARLHLMSSSIYEDVVQKVLLRDLPRCG 60
TYHQWNQLQFTLNRFSFGHSDVDCTILSALSNAARLHLMSSSIYEDVVQKVLLRDLPRCG
Sbjct: 1 TYHQWNQLQFTLNRFSFGHSDVDCTILSALSNAARLHLMSSSIYEDVVQKVLLRDLPRCG 60
Query: 61 IFSNLTSLALGELFFSDGCYPLLYLLRHSPNIEKLSLHLVKHGAYAYDHDTNSANATADL 120
IFSNLTSLALGELFFSDGCYPLLYLLRHSPNIEKLSLHLVKHGAYAYDHDTNSANATADL
Sbjct: 61 IFSNLTSLALGELFFSDGCYPLLYLLRHSPNIEKLSLHLVKHGAYAYDHDTNSANATADL 120
Query: 121 DPTCEGTGTAVNCEKLRKIKIICPQGDRRVHIIVKILFSIINPLPQIKIHPQNG 174
DPTCEGTGTAVNCEKLRKIKIICPQGDRRVHIIVKILFSIINPLPQIKIHPQNG
Sbjct: 121 DPTCEGTGTAVNCEKLRKIKIICPQGDRRVHIIVKILFSIINPLPQIKIHPQNG 174
>Os08g0149100 Conserved hypothetical protein
Length = 226
Score = 174 bits (440), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 89/156 (57%), Positives = 109/156 (69%), Gaps = 4/156 (2%)
Query: 16 SFGHSDVDCTILSALSNAARLHLMSSSIYEDVVQKVLLRDLPRCGIFSNLTSLALGELFF 75
SF +S VDC ILSALSNA L L+ S+Y D V KVL+RDLPRC F NL L LGE F
Sbjct: 67 SFRNSAVDCNILSALSNATSLKLICDSVY-DEVSKVLMRDLPRCKAFDNLKRLKLGEWFL 125
Query: 76 SDGCYPLLYLLRHSPNIEKLSLHLVKHGAYAYDHDTNSANATADLDPTCEGTGTAVNCEK 135
+GCYPLL+LLR+SP+IEKL L L K GA Y+ A A +DP C+ +CEK
Sbjct: 126 RNGCYPLLFLLRYSPHIEKLRLQLTKLGAEEYE---KFPTAAAAIDPPCKEAARTFHCEK 182
Query: 136 LRKIKIICPQGDRRVHIIVKILFSIINPLPQIKIHP 171
L +I+I+ PQGD+RVHIIV+IL + I+PLP+IKI P
Sbjct: 183 LTEIEIVYPQGDKRVHIIVRILIANISPLPEIKIKP 218
>Os08g0149050 Conserved hypothetical protein
Length = 137
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/125 (58%), Positives = 84/125 (67%), Gaps = 3/125 (2%)
Query: 47 VVQKVLLRDLPRCGIFSNLTSLALGELFFSDGCYPLLYLLRHSPNIEKLSLHLVKHGAYA 106
VV VL+R PRC FSNL L LGE F DGCYPLL+LLR SPNIEKL L L K+G+
Sbjct: 13 VVPNVLIRSFPRCKTFSNLKYLKLGEWFLRDGCYPLLFLLRRSPNIEKLHLQLNKYGSDD 72
Query: 107 YDHDTNSANATADLDPTCEGTGTAVNCEKLRKIKIICPQGDRRVHIIVKILFSIINPLPQ 166
Y+ + +A A +DPTC NC KLRKI I PQGD RVHIIV+IL + I+PLP
Sbjct: 73 YE---DYPDAAAAIDPTCREIEEMFNCVKLRKITIFYPQGDERVHIIVRILIANISPLPA 129
Query: 167 IKIHP 171
IKI P
Sbjct: 130 IKIKP 134
>Os08g0150500 Cyclin-like F-box domain containing protein
Length = 527
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 83/166 (50%), Gaps = 12/166 (7%)
Query: 10 FTLNRFSFGHSDVDCTILSALSNAARLHLMSSSIYEDVVQ----KVLLRDLPRCGIFSNL 65
F L+ SF + ILSALSN L L+ +D Q +VL RDL RC F++L
Sbjct: 365 FRLDDMSFPCFHMKYNILSALSNVKNLKLLIGQFNDDAFQLMQNEVLKRDLWRCRTFNSL 424
Query: 66 TSLALGELFFSDGCYPLLYLLRHSPNIEKLSLHLVKHGAYAYDHDTNSANATADLDPTCE 125
L++ + + L++LLR SP +EKL+LHL G A++ + P E
Sbjct: 425 KKLSVSDWCVDGELHTLIHLLRCSPILEKLTLHLGVIGGLAWEQWMSY--------PQSE 476
Query: 126 GTGTAVNCEKLRKIKIICPQGDRRVHIIVKILFSIINPLPQIKIHP 171
+ CE L+K+KI C D+RV IV + N LP+I I P
Sbjct: 477 MPDMSFICEHLKKVKITCANDDKRVPAIVNAILVNANSLPEIVIKP 522
>Os08g0150600 Conserved hypothetical protein
Length = 141
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 8/122 (6%)
Query: 50 KVLLRDLPRCGIFSNLTSLALGELFFSDGCYPLLYLLRHSPNIEKLSLHLVKHGAYAYDH 109
+VL RDL RC F+NL L++ + + L+YLLR SP IEKL+LHL A++
Sbjct: 23 EVLKRDLRRCQSFNNLKKLSVDDWYVDVDLSALIYLLRCSPIIEKLTLHLGMIEGLAWEQ 82
Query: 110 DTNSANATADLDPTCEGTGTAVNCEKLRKIKIICPQGDRRVHIIVKILFSIINPLPQIKI 169
+ P E + +CE+L+K+KIIC Q D+RV IV + + N LP+I I
Sbjct: 83 WMSY--------PQEETPDLSFSCERLKKVKIICVQDDKRVPAIVNAILANANSLPEIVI 134
Query: 170 HP 171
P
Sbjct: 135 KP 136
>Os08g0197500 Cyclin-like F-box domain containing protein
Length = 543
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 72/146 (49%), Gaps = 16/146 (10%)
Query: 25 TILSALSNAARLHLMSSSIYEDVVQKVLLRDLPRCGIFSNLTSLALGELFFSDGCYPLLY 84
++ +LSN L L++ + + VL R+L C IF NL +L+LGE L++
Sbjct: 364 NVIHSLSNVRSLELLAGA-----GEVVLSRELKSCPIFINLKTLSLGEWCMDAEFDALVF 418
Query: 85 LLRHSPNIEKLSLHLVKHGAYAYDHDTNSANATADLDPTCEGTGTAVNCEKLRKIKIICP 144
LL+ SPN+E+L L + N L+ + TG + C+ L+ +KI C
Sbjct: 419 LLQRSPNLERLFL-----------EPQLNFNTRKALESGVKPTGRSFTCKDLQMVKIRCS 467
Query: 145 QGDRRVHIIVKILFSIINPLPQIKIH 170
+ D RVH++ + + P +I +H
Sbjct: 468 KDDARVHMLAHLFRANGIPFDKIYVH 493
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.139 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,740,706
Number of extensions: 213325
Number of successful extensions: 551
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 555
Number of HSP's successfully gapped: 7
Length of query: 174
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 80
Effective length of database: 12,127,685
Effective search space: 970214800
Effective search space used: 970214800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 152 (63.2 bits)