BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0120600 Os08g0120600|AK104952
(362 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0120600 Similar to Fructose-bisphosphate aldolase, cyt... 683 0.0
Os01g0905800 Aldolase C-1 553 e-158
AK071547 550 e-157
Os05g0402700 Similar to Fructose-bisphosphate aldolase, cyt... 498 e-141
Os06g0608700 Similar to Fructose-bisphosphate aldolase, cyt... 491 e-139
Os11g0171300 Fructose-bisphosphate aldolase, chloroplast pr... 368 e-102
AK105927 365 e-101
Os01g0118000 Similar to Fructose-bisphosphate aldolase (EC ... 359 2e-99
Os09g0113100 122 5e-28
>Os08g0120600 Similar to Fructose-bisphosphate aldolase, cytoplasmic isozyme (EC
4.1.2.13)
Length = 362
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/362 (93%), Positives = 337/362 (93%)
Query: 1 MSAYCGKYKDELIRNAAYIGTPGKGILAADESTGTIGKRLASIGVENVEENRRALRELLF 60
MSAYCGKYKDELIRNAAYIGTPGKGILAADESTGTIGKRLASIGVENVEENRRALRELLF
Sbjct: 1 MSAYCGKYKDELIRNAAYIGTPGKGILAADESTGTIGKRLASIGVENVEENRRALRELLF 60
Query: 61 TAPGALDCLSGVILFEETLYQSTRDGTPFVDXXXXXXXXXXIKVDKGTVELAGTDRETTT 120
TAPGALDCLSGVILFEETLYQSTRDGTPFVD IKVDKGTVELAGTDRETTT
Sbjct: 61 TAPGALDCLSGVILFEETLYQSTRDGTPFVDVLAAAGVLAGIKVDKGTVELAGTDRETTT 120
Query: 121 QGHDGLGERCRRYYAAGARFAKWRAVLSIGRASSRPSQLAVDANAQGLARYAIICQENGL 180
QGHDGLGERCRRYYAAGARFAKWRAVLSIGRASSRPSQLAVDANAQGLARYAIICQENGL
Sbjct: 121 QGHDGLGERCRRYYAAGARFAKWRAVLSIGRASSRPSQLAVDANAQGLARYAIICQENGL 180
Query: 181 VPIVEPEILVDGEHGIEACAEVTERVLAACYKALSDHHVLLEGTLLKPNMVTPGSDAARA 240
VPIVEPEILVDGEHGIEACAEVTERVLAACYKALSDHHVLLEGTLLKPNMVTPGSDAARA
Sbjct: 181 VPIVEPEILVDGEHGIEACAEVTERVLAACYKALSDHHVLLEGTLLKPNMVTPGSDAARA 240
Query: 241 PPEVVAEHTVRALLRTVPPAVPAIVFLSGGQSEEEATRNLNAMNQVASRGKKPWSLTFSF 300
PPEVVAEHTVRALLRTVPPAVPAIVFLSGGQSEEEATRNLNAMNQVASRGKKPWSLTFSF
Sbjct: 241 PPEVVAEHTVRALLRTVPPAVPAIVFLSGGQSEEEATRNLNAMNQVASRGKKPWSLTFSF 300
Query: 301 GRALQQSTLKAWAGKAENVGKAQAALLARCRANSQXXXXXXXXXXXXXXXVSENLHVKDY 360
GRALQQSTLKAWAGKAENVGKAQAALLARCRANSQ VSENLHVKDY
Sbjct: 301 GRALQQSTLKAWAGKAENVGKAQAALLARCRANSQATLGAYAGDAAAGEGVSENLHVKDY 360
Query: 361 KY 362
KY
Sbjct: 361 KY 362
>Os01g0905800 Aldolase C-1
Length = 358
Score = 553 bits (1425), Expect = e-158, Method: Compositional matrix adjust.
Identities = 270/362 (74%), Positives = 302/362 (83%), Gaps = 4/362 (1%)
Query: 1 MSAYCGKYKDELIRNAAYIGTPGKGILAADESTGTIGKRLASIGVENVEENRRALRELLF 60
MSAYCGKYKDELI+NAAYIGTPGKGILAADESTGTIGKR ASI VENVEENRR+LRELLF
Sbjct: 1 MSAYCGKYKDELIKNAAYIGTPGKGILAADESTGTIGKRFASINVENVEENRRSLRELLF 60
Query: 61 TAPGALDCLSGVILFEETLYQSTRDGTPFVDXXXXXXXXXXIKVDKGTVELAGTDRETTT 120
T PGAL LSGVILFEETLYQ T+DG PFVD IKVDKGTVE+AGT++ETTT
Sbjct: 61 TTPGALQHLSGVILFEETLYQKTKDGKPFVDVLKEGGVLPGIKVDKGTVEVAGTNKETTT 120
Query: 121 QGHDGLGERCRRYYAAGARFAKWRAVLSIGRASSRPSQLAVDANAQGLARYAIICQENGL 180
QGHD LG+RC +YY AGARFAKWRAVL IG + PSQL++D NAQGLARYAIICQENGL
Sbjct: 121 QGHDDLGKRCAKYYEAGARFAKWRAVLKIG--PNEPSQLSIDLNAQGLARYAIICQENGL 178
Query: 181 VPIVEPEILVDGEHGIEACAEVTERVLAACYKALSDHHVLLEGTLLKPNMVTPGSDAARA 240
VPIVEPEILVDG H IE CA VTE+VLAACYKAL++HHVLLEG+LLKPNMVTPGS++ +
Sbjct: 179 VPIVEPEILVDGSHDIERCAYVTEKVLAACYKALNEHHVLLEGSLLKPNMVTPGSESKKV 238
Query: 241 PPEVVAEHTVRALLRTVPPAVPAIVFLSGGQSEEEATRNLNAMNQVASRGKKPWSLTFSF 300
P+++AE+TVRAL RTVP AVPAIVFLSGGQSEEEAT NLNAMN++++ KKPW+L+FSF
Sbjct: 239 SPQLIAEYTVRALQRTVPAAVPAIVFLSGGQSEEEATVNLNAMNKLST--KKPWALSFSF 296
Query: 301 GRALQQSTLKAWAGKAENVGKAQAALLARCRANSQXXXXXXXXXXXXXXXVSENLHVKDY 360
GRALQQSTLKAW GK ENV KAQ A + RC+ANS+ SE+LHVKDY
Sbjct: 297 GRALQQSTLKAWGGKTENVVKAQKAFITRCKANSEATLGTYQGDAVLGEGASESLHVKDY 356
Query: 361 KY 362
KY
Sbjct: 357 KY 358
>AK071547
Length = 358
Score = 550 bits (1418), Expect = e-157, Method: Compositional matrix adjust.
Identities = 270/362 (74%), Positives = 301/362 (83%), Gaps = 4/362 (1%)
Query: 1 MSAYCGKYKDELIRNAAYIGTPGKGILAADESTGTIGKRLASIGVENVEENRRALRELLF 60
MSAYCGKYKDELI+NAAYIGTPGKGILAADESTGTIGKR ASI VENVE+NRRA RELLF
Sbjct: 1 MSAYCGKYKDELIKNAAYIGTPGKGILAADESTGTIGKRFASINVENVEDNRRAFRELLF 60
Query: 61 TAPGALDCLSGVILFEETLYQSTRDGTPFVDXXXXXXXXXXIKVDKGTVELAGTDRETTT 120
PGAL +SGVILF+ETLYQ T+DG PFVD IKVDKGT+E+AGTD+ETTT
Sbjct: 61 CTPGALQYISGVILFDETLYQKTKDGKPFVDVLKEAGALPGIKVDKGTIEVAGTDKETTT 120
Query: 121 QGHDGLGERCRRYYAAGARFAKWRAVLSIGRASSRPSQLAVDANAQGLARYAIICQENGL 180
QGHD LG++C +YY AGARFAKWRAVL IG ++PSQLA+D NAQGLA YAIICQENGL
Sbjct: 121 QGHDDLGKQCAKYYEAGARFAKWRAVLKIG--PNQPSQLAIDLNAQGLACYAIICQENGL 178
Query: 181 VPIVEPEILVDGEHGIEACAEVTERVLAACYKALSDHHVLLEGTLLKPNMVTPGSDAARA 240
VPIVEPEILVDG H I+ CA V+E VLAACYKAL++HHVLLEGTLLKPNMVTPGSDA +
Sbjct: 179 VPIVEPEILVDGPHDIDRCAYVSEVVLAACYKALNEHHVLLEGTLLKPNMVTPGSDAKKV 238
Query: 241 PPEVVAEHTVRALLRTVPPAVPAIVFLSGGQSEEEATRNLNAMNQVASRGKKPWSLTFSF 300
PEV+AE+TVR L RTVPPAVPAIVFLSGGQSEEEAT NLNAMN++++ KKPWSL+FSF
Sbjct: 239 APEVIAEYTVRTLQRTVPPAVPAIVFLSGGQSEEEATLNLNAMNKLSA--KKPWSLSFSF 296
Query: 301 GRALQQSTLKAWAGKAENVGKAQAALLARCRANSQXXXXXXXXXXXXXXXVSENLHVKDY 360
GRALQQSTLKAWAGK ENV KA+AA L RC+ANS+ +E+LHVKDY
Sbjct: 297 GRALQQSTLKAWAGKTENVEKARAAFLVRCKANSEATLGTYKGDAVLGEGAAESLHVKDY 356
Query: 361 KY 362
KY
Sbjct: 357 KY 358
>Os05g0402700 Similar to Fructose-bisphosphate aldolase, cytoplasmic isozyme (EC
4.1.2.13)
Length = 333
Score = 498 bits (1281), Expect = e-141, Method: Compositional matrix adjust.
Identities = 245/310 (79%), Positives = 269/310 (86%), Gaps = 4/310 (1%)
Query: 1 MSAYCGKYKDELIRNAAYIGTPGKGILAADESTGTIGKRLASIGVENVEENRRALRELLF 60
MSAYCGKYKDELI+NAAYIGTPGKGILAADESTGTIGKR ASI VENVEENRR+LRELLF
Sbjct: 1 MSAYCGKYKDELIKNAAYIGTPGKGILAADESTGTIGKRFASINVENVEENRRSLRELLF 60
Query: 61 TAPGALDCLSGVILFEETLYQSTRDGTPFVDXXXXXXXXXXIKVDKGTVELAGTDRETTT 120
PGAL LSGVILFEETLYQ T+DG PFVD IKVDKGT+E+AGT++ETTT
Sbjct: 61 CTPGALQYLSGVILFEETLYQKTKDGKPFVDVLKEGGVLPGIKVDKGTIEVAGTEKETTT 120
Query: 121 QGHDGLGERCRRYYAAGARFAKWRAVLSIGRASSRPSQLAVDANAQGLARYAIICQENGL 180
QGHD LG+RC +YY AGARFAKWRAVL IG + PSQLA+D NAQGLARYAIICQENGL
Sbjct: 121 QGHDDLGKRCAKYYEAGARFAKWRAVLKIG--PNEPSQLAIDLNAQGLARYAIICQENGL 178
Query: 181 VPIVEPEILVDGEHGIEACAEVTERVLAACYKALSDHHVLLEGTLLKPNMVTPGSDAARA 240
VPIVEPEILVDG H I+ CA V+E VLAACYKAL++HHVLLEGTLLKPNMVTPGSDA +
Sbjct: 179 VPIVEPEILVDGPHDIDRCAYVSEVVLAACYKALNEHHVLLEGTLLKPNMVTPGSDAKKV 238
Query: 241 PPEVVAEHTVRALLRTVPPAVPAIVFLSGGQSEEEATRNLNAMNQVASRGKKPWSLTFSF 300
PEV+AE+TVR L RTVP AVPAIVFLSGGQSEEEAT NLNAMN++++ KKPWSL+FSF
Sbjct: 239 SPEVIAEYTVRTLQRTVPAAVPAIVFLSGGQSEEEATLNLNAMNKLST--KKPWSLSFSF 296
Query: 301 GRALQQSTLK 310
GRALQQSTL+
Sbjct: 297 GRALQQSTLR 306
>Os06g0608700 Similar to Fructose-bisphosphate aldolase, cytoplasmic isozyme (EC
4.1.2.13)
Length = 358
Score = 491 bits (1264), Expect = e-139, Method: Compositional matrix adjust.
Identities = 255/362 (70%), Positives = 283/362 (78%), Gaps = 4/362 (1%)
Query: 1 MSAYCGKYKDELIRNAAYIGTPGKGILAADESTGTIGKRLASIGVENVEENRRALRELLF 60
MSA+ GKY DELI+ A YI TPGKGILAADESTGTIGKRLASI VENVE NR+ALRELLF
Sbjct: 1 MSAFVGKYADELIKTAKYIATPGKGILAADESTGTIGKRLASINVENVEPNRQALRELLF 60
Query: 61 TAPGALDCLSGVILFEETLYQSTRDGTPFVDXXXXXXXXXXIKVDKGTVELAGTDRETTT 120
T PGA LSGVILFEETLYQST GTPFVD IKVDKGTV++AGT+ ETTT
Sbjct: 61 TTPGAFQYLSGVILFEETLYQSTAAGTPFVDVLKAGGVVPGIKVDKGTVDIAGTNGETTT 120
Query: 121 QGHDGLGERCRRYYAAGARFAKWRAVLSIGRASSRPSQLAVDANAQGLARYAIICQENGL 180
QG D LG RC +YY AGARFAKWRAVL IG A+ PS+LAV NA+GLARYA+ICQENGL
Sbjct: 121 QGLDSLGARCAKYYEAGARFAKWRAVLKIG-AAGEPSELAVKQNAEGLARYALICQENGL 179
Query: 181 VPIVEPEILVDGEHGIEACAEVTERVLAACYKALSDHHVLLEGTLLKPNMVTPGSDAARA 240
VPIVEPEIL DG H I+ CA VTERVLAA YK+L+DH VLLEGTLLKPNMVTPGSD+ +
Sbjct: 180 VPIVEPEILTDGAHDIKTCAAVTERVLAAVYKSLNDHKVLLEGTLLKPNMVTPGSDSPKV 239
Query: 241 PPEVVAEHTVRALLRTVPPAVPAIVFLSGGQSEEEATRNLNAMNQVASRGKKPWSLTFSF 300
EV+ E+TV AL RTVPPAVP IVFLSGGQSEEEA++NLNAMN++ KPW+LTFSF
Sbjct: 240 GAEVIGEYTVAALRRTVPPAVPGIVFLSGGQSEEEASQNLNAMNKLEVL--KPWTLTFSF 297
Query: 301 GRALQQSTLKAWAGKAENVGKAQAALLARCRANSQXXXXXXXXXXXXXXXVSENLHVKDY 360
GRALQQST+K W GK ENV AQAA LARC+ANS+ SE+L+VK Y
Sbjct: 298 GRALQQSTIKKWGGKKENVAAAQAAFLARCKANSE-ATLGKYGGAAGDAATSESLYVKGY 356
Query: 361 KY 362
Y
Sbjct: 357 TY 358
>Os11g0171300 Fructose-bisphosphate aldolase, chloroplast precursor (EC 4.1.2.13)
(ALDP)
Length = 388
Score = 368 bits (944), Expect = e-102, Method: Compositional matrix adjust.
Identities = 196/363 (53%), Positives = 240/363 (66%), Gaps = 9/363 (2%)
Query: 1 MSAYCGKYKDELIRNAAYIGTPGKGILAADESTGTIGKRLASIGVENVEENRRALRELLF 60
M G Y DEL++ A I +PG+GILA DES T GKRLASIG+EN E NR+A R LL
Sbjct: 34 MVVRAGAYDDELVKTAKTIASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLV 93
Query: 61 TAPGALDCLSGVILFEETLYQSTRDGTPFVDXXXXXXXXXXIKVDKGTVELAGTDRETTT 120
TAPG +SG ILFEETLYQST DG VD IKVDKG V LAG++ E+
Sbjct: 94 TAPGLGQYISGAILFEETLYQSTVDGKKIVDILTEQKIVPGIKVDKGLVPLAGSNNESWC 153
Query: 121 QGHDGLGERCRRYYAAGARFAKWRAVLSIGRASSRPSQLAVDANAQGLARYAIICQENGL 180
QG DGL R YY GARFAKWR V+SI + PS+LAV A GLARYA I Q+NGL
Sbjct: 154 QGLDGLASREAAYYQQGARFAKWRTVVSI---PNGPSELAVKEAAWGLARYAAISQDNGL 210
Query: 181 VPIVEPEILVDGEHGIEACAEVTERVLAACYKALSDHHVLLEGTLLKPNMVTPGSDAA-R 239
VPIVEPEIL+DGEHGI+ EV ++V A + +++++V+ EG LLKP+MVTPG++ R
Sbjct: 211 VPIVEPEILLDGEHGIDRTFEVAQKVWAETFFYMAENNVMFEGILLKPSMVTPGAECKDR 270
Query: 240 APPEVVAEHTVRALLRTVPPAVPAIVFLSGGQSEEEATRNLNAMNQVASRGKKPWSLTFS 299
A PE V+++T++ L R +PPAVP I+FLSGGQSE EAT+NLNAMNQ G PW ++FS
Sbjct: 271 ATPEQVSDYTLKLLHRRIPPAVPGIMFLSGGQSEVEATQNLNAMNQ----GPNPWHVSFS 326
Query: 300 FGRALQQSTLKAWAGKAENVGKAQAALLARCRANSQXXXXXXXXXXXXXXXVSENLHVKD 359
+ RALQ + LK W G+ ENV AQ ALL R +ANS E + VK+
Sbjct: 327 YARALQNTCLKTWGGQPENVKAAQDALLLRAKANS-LAQLGKYTSDGEAAEAKEGMFVKN 385
Query: 360 YKY 362
Y Y
Sbjct: 386 YVY 388
>AK105927
Length = 463
Score = 365 bits (936), Expect = e-101, Method: Compositional matrix adjust.
Identities = 191/335 (57%), Positives = 233/335 (69%), Gaps = 8/335 (2%)
Query: 1 MSAYCGKYKDELIRNAAYIGTPGKGILAADESTGTIGKRLASIGVENVEENRRALRELLF 60
M G Y DEL++ A I +PG+GILA DES T GKRLASIG+EN E NR+A R LL
Sbjct: 34 MVVRAGAYDDELVKTAKTIASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLV 93
Query: 61 TAPGALDCLSGVILFEETLYQSTRDGTPFVDXXXXXXXXXXIKVDKGTVELAGTDRETTT 120
TAPG +SG ILFEETLYQST DG VD IKVDKG V LAG++ E+
Sbjct: 94 TAPGLGQYISGAILFEETLYQSTVDGKKIVDILTEQKIVPGIKVDKGLVPLAGSNNESWC 153
Query: 121 QGHDGLGERCRRYYAAGARFAKWRAVLSIGRASSRPSQLAVDANAQGLARYAIICQENGL 180
QG DGL R YY GARFAKWR V+SI + PS+LAV A GLARYA I Q+NGL
Sbjct: 154 QGLDGLASREAAYYQQGARFAKWRTVVSI---PNGPSELAVKEAAWGLARYAAISQDNGL 210
Query: 181 VPIVEPEILVDGEHGIEACAEVTERVLAACYKALSDHHVLLEGTLLKPNMVTPGSDAA-R 239
VPIVEPEIL+DGEHGI+ EV ++V A + +++++V+ EG LLKP+MVTPG++ R
Sbjct: 211 VPIVEPEILLDGEHGIDRTFEVAQKVWAETFFYMAENNVMFEGILLKPSMVTPGAECKDR 270
Query: 240 APPEVVAEHTVRALLRTVPPAVPAIVFLSGGQSEEEATRNLNAMNQVASRGKKPWSLTFS 299
A PE V+++T++ L R +PPAVP I+FLSGGQSE EAT+NLNAMNQ G PW ++FS
Sbjct: 271 ATPEQVSDYTLKLLHRRIPPAVPGIMFLSGGQSEVEATQNLNAMNQ----GPNPWHVSFS 326
Query: 300 FGRALQQSTLKAWAGKAENVGKAQAALLARCRANS 334
+ RALQ + LK W G+ ENV AQ ALL R +ANS
Sbjct: 327 YARALQNTCLKTWGGQPENVKAAQDALLLRAKANS 361
>Os01g0118000 Similar to Fructose-bisphosphate aldolase (EC 4.1.2.13) (Fragment)
Length = 388
Score = 359 bits (922), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 188/328 (57%), Positives = 225/328 (68%), Gaps = 8/328 (2%)
Query: 8 YKDELIRNAAYIGTPGKGILAADESTGTIGKRLASIGVENVEENRRALRELLFTAPGALD 67
Y DEL+ A + +PG+GILA DES T GKRLASIG++N E NR+A R+LL T G +
Sbjct: 41 YADELVSTAKSVASPGRGILAIDESNATCGKRLASIGLDNTEVNRQAYRQLLLTTAGLGE 100
Query: 68 CLSGVILFEETLYQSTRDGTPFVDXXXXXXXXXXIKVDKGTVELAGTDRETTTQGHDGLG 127
+SG ILFEETLYQST DG FVD IKVDKG V L G++ E+ QG DGL
Sbjct: 101 YISGAILFEETLYQSTTDGKKFVDCLKDQNIMPGIKVDKGLVPLPGSNNESWCQGLDGLA 160
Query: 128 ERCRRYYAAGARFAKWRAVLSIGRASSRPSQLAVDANAQGLARYAIICQENGLVPIVEPE 187
RC YY GARFAKWR V+SI PS LAV A GLARYA I Q+NGLVPIVEPE
Sbjct: 161 SRCAEYYKQGARFAKWRTVVSI---PCGPSALAVKEAAWGLARYAAIAQDNGLVPIVEPE 217
Query: 188 ILVDGEHGIEACAEVTERVLAACYKALSDHHVLLEGTLLKPNMVTPGSD-AARAPPEVVA 246
IL+DG+H IE EV E+V + + L+ ++VL EG LLKP+MVTPG++ +A PE +A
Sbjct: 218 ILLDGDHAIERTLEVAEKVWSEVFFYLAQNNVLFEGILLKPSMVTPGAEHKQKATPEAIA 277
Query: 247 EHTVRALLRTVPPAVPAIVFLSGGQSEEEATRNLNAMNQVASRGKKPWSLTFSFGRALQQ 306
+HT+ L R VPPAVP I+FLSGGQSE EAT NLNAMNQ + PW ++FS+ RALQ
Sbjct: 278 KHTLTMLRRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQEPN----PWHVSFSYARALQN 333
Query: 307 STLKAWAGKAENVGKAQAALLARCRANS 334
S LK W G+ ENV AQ ALL R +ANS
Sbjct: 334 SVLKTWQGRPENVEAAQKALLVRAKANS 361
>Os09g0113100
Length = 192
Score = 122 bits (306), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 70/113 (61%), Positives = 78/113 (69%), Gaps = 14/113 (12%)
Query: 126 LGERCRRYY----AAGARFAKWRAVLSIGRASS--------RPSQLAVDANAQGLARYAI 173
+G+RCR A A +++ GR SS +PSQLA + NAQG+ARY I
Sbjct: 65 VGQRCRHARESAEVAAAALLPSLVLVATGRPSSPCSPQPASKPSQLA-NTNAQGVARYTI 123
Query: 174 ICQENGLVPIVEPEILVDGEHGIEACAEVTERVLAACYKALSDHHVLLEGTLL 226
ICQENGLVPIV PEILVDGEHGIE C EVTERVLAACYK LSD HVLLEGT L
Sbjct: 124 ICQENGLVPIVGPEILVDGEHGIEVCTEVTERVLAACYKVLSD-HVLLEGTTL 175
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.132 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,316,774
Number of extensions: 435370
Number of successful extensions: 1215
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 1198
Number of HSP's successfully gapped: 9
Length of query: 362
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 260
Effective length of database: 11,709,973
Effective search space: 3044592980
Effective search space used: 3044592980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)