Os01g0905800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Aldolase C-1.
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Os01g0905800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Aldolase C-1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74.11 | 0.404 | 13.6 | 0.315 | 1.27 | 2.68 | -1.12 | -2.95 | 0.309 | 19.6 | 0.95 | 729 | -- | -- |
| 77.21 | 0.409 | 13.6 | 0.374 | 1.84 | 3.41 | 1.27 | -- | 0.286 | 18.7 | 0.53 | 721 | -- | -- |
| 75.2 | 0.404 | 13.6 | 0.349 | 1.49 | 2.95 | -- | -1.73 | 0.308 | 19.3 | 0.82 | 728 | -- | -- |
| 79.83 | 0.416 | 13.6 | 0.313 | 1.66 | 3.13 | -- | -- | 0.303 | 19.1 | 0.53 | 726 | -- | -- |
| 126.79 | 0.524 | 13.5 | 0.869 | -- | 1.42 | -- | -1.46 | 0.505 | -- | 20.02 | 457 | -- | -- |
| 91.26 | 0.448 | 13.6 | 0.0381 | 1.11 | -- | -1.59 | -- | 0.174 | 3.6 | -- | -- | -- | -- |
| 98.93 | 0.466 | 13.6 | 0.0641 | 1.11 | -- | -- | -- | 0.183 | 3.62 | -- | -- | -- | -- |
| 88.35 | 0.438 | 13.6 | 0.349 | -- | 1.9 | -- | -- | 0.333 | -- | 0.7222 | 1937 | -- | -- |
| 82.26 | 0.422 | 13.6 | -- | 1.59 | 3.05 | -- | -- | 0.274 | 19.2 | 0.8113 | 726 | -- | -- |
| 167.05 | 0.604 | 13.6 | 0.11 | -- | -- | -- | -- | 0.213 | -- | -- | -- | -- | -- |
| 99.04 | 0.466 | 13.6 | -- | 1.11 | -- | -- | -- | 0.176 | 3.62 | -- | -- | -- | -- |
| 89.05 | 0.44 | 13.6 | -- | -- | 1.88 | -- | -- | 0.304 | -- | 1.127 | 1920 | -- | -- |
| 167.37 | 0.604 | 13.6 | -- | -- | -- | -- | -- | 0.2 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 67.44 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 16 |
| 2 | 69.47 | radiation | 1 | 720 | < th | dose independent | rect. | 4 | 16 |
| 3 | 69.48 | radiation | 1 | 720 | < th | dose dependent | sin | 0 | NA |
| 4 | 69.55 | radiation | 1 | 720 | < th | dose dependent | sin | 17 | NA |
| 6 | 69.85 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 16 |
| 7 | 69.92 | radiation | 1 | 720 | < th | dose independent | sin | 14 | NA |
| 11 | 70.08 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 6 |
| 14 | 70.40 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 16 |
| 27 | 70.93 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 6 |
| 28 | 71.00 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 14 |
| 37 | 71.21 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 12 |
| 38 | 71.22 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 19 |
| 42 | 71.29 | radiation | 1 | 720 | > th | dose independent | sin | 14 | NA |
| 48 | 71.37 | temperature | 25 | 90 | < th | dose independent | rect. | 19 | 2 |
| 54 | 71.43 | radiation | 1 | 720 | < th | dose independent | sin | 0 | NA |
| 59 | 71.58 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 19 |
| 61 | 71.60 | radiation | 1 | 720 | < th | dose independent | rect. | 10 | 20 |
| 62 | 71.63 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 19 |
| 63 | 71.65 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 12 |
| 85 | 72.00 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 17 |
| 105 | 72.24 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 19 |
| 108 | 72.26 | radiation | 1 | 720 | < th | dose dependent | rect. | 10 | 20 |
| 109 | 72.27 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 17 |
| 115 | 72.36 | humidity | 70 | 10 | > th | dose dependent | rect. | 19 | 1 |
| 121 | 72.54 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 6 |
| 155 | 72.82 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 19 |
| 164 | 72.89 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 2 |
| 225 | 73.48 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 23 |
| 239 | 73.59 | humidity | 80 | 10 | > th | dose independent | rect. | 19 | 1 |
| 267 | 73.74 | radiation | 1 | 720 | > th | dose independent | rect. | 12 | 23 |
| 270 | 73.75 | radiation | 1 | 720 | < th | dose independent | rect. | 24 | 23 |
| 275 | 73.76 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 3 |
| 277 | 73.78 | radiation | 1 | 720 | < th | dose independent | rect. | 21 | 23 |
| 323 | 74.07 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 22 |
| 374 | 74.35 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 383 | 74.39 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |
| 384 | 74.39 | radiation | 1 | 720 | > th | dose independent | rect. | 4 | 15 |
| 430 | 74.40 | radiation | 1 | 720 | > th | dose independent | rect. | 6 | 23 |
| 435 | 74.43 | radiation | 1 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 448 | 74.45 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 507 | 74.67 | temperature | 15 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 519 | 74.76 | humidity | 60 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 532 | 74.82 | humidity | 50 | 30 | > th | dose dependent | rect. | 19 | 18 |
| 558 | 74.94 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 602 | 75.07 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 606 | 75.07 | humidity | 50 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 612 | 75.07 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 616 | 75.07 | radiation | 1 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 636 | 75.07 | temperature | 10 | 1440 | > th | dose independent | rect. | 21 | 23 |
| 639 | 75.07 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 706 | 75.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 922 | 75.76 | radiation | 30 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 938 | 75.79 | radiation | 40 | 720 | < th | dose dependent | rect. | 15 | 15 |
| 942 | 75.81 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 23 |