BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0905800 Os01g0905800|AK073770
(358 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0905800 Aldolase C-1 736 0.0
AK071547 673 0.0
Os05g0402700 Similar to Fructose-bisphosphate aldolase, cyt... 600 e-172
Os08g0120600 Similar to Fructose-bisphosphate aldolase, cyt... 575 e-164
Os06g0608700 Similar to Fructose-bisphosphate aldolase, cyt... 550 e-157
Os11g0171300 Fructose-bisphosphate aldolase, chloroplast pr... 392 e-109
Os01g0118000 Similar to Fructose-bisphosphate aldolase (EC ... 385 e-107
AK105927 384 e-107
Os09g0113100 103 2e-22
>Os01g0905800 Aldolase C-1
Length = 358
Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/358 (100%), Positives = 358/358 (100%)
Query: 1 MSAYCGKYKDELIKNAAYIGTPGKGILAADESTGTIGKRFASINVENVEENRRSLRELLF 60
MSAYCGKYKDELIKNAAYIGTPGKGILAADESTGTIGKRFASINVENVEENRRSLRELLF
Sbjct: 1 MSAYCGKYKDELIKNAAYIGTPGKGILAADESTGTIGKRFASINVENVEENRRSLRELLF 60
Query: 61 TTPGALQHLSGVILFEETLYQKTKDGKPFVDVLKEGGVLPGIKVDKGTVEVAGTNKETTT 120
TTPGALQHLSGVILFEETLYQKTKDGKPFVDVLKEGGVLPGIKVDKGTVEVAGTNKETTT
Sbjct: 61 TTPGALQHLSGVILFEETLYQKTKDGKPFVDVLKEGGVLPGIKVDKGTVEVAGTNKETTT 120
Query: 121 QGHDDLGKRCAKYYEAGARFAKWRAVLKIGPNEPSQLSIDLNAQGLARYAIICQENGLVP 180
QGHDDLGKRCAKYYEAGARFAKWRAVLKIGPNEPSQLSIDLNAQGLARYAIICQENGLVP
Sbjct: 121 QGHDDLGKRCAKYYEAGARFAKWRAVLKIGPNEPSQLSIDLNAQGLARYAIICQENGLVP 180
Query: 181 IVEPEILVDGSHDIERCAYVTEKVLAACYKALNEHHVLLEGSLLKPNMVTPGSESKKVSP 240
IVEPEILVDGSHDIERCAYVTEKVLAACYKALNEHHVLLEGSLLKPNMVTPGSESKKVSP
Sbjct: 181 IVEPEILVDGSHDIERCAYVTEKVLAACYKALNEHHVLLEGSLLKPNMVTPGSESKKVSP 240
Query: 241 QLIAEYTVRALQRTVPAAVPAIVFLSGGQSEEEATVNLNAMNKLSTKKPWALSFSFGRAL 300
QLIAEYTVRALQRTVPAAVPAIVFLSGGQSEEEATVNLNAMNKLSTKKPWALSFSFGRAL
Sbjct: 241 QLIAEYTVRALQRTVPAAVPAIVFLSGGQSEEEATVNLNAMNKLSTKKPWALSFSFGRAL 300
Query: 301 QQSTLKAWGGKTENVVKAQKAFITRCKANSEATLGTYQGDAVLGEGASESLHVKDYKY 358
QQSTLKAWGGKTENVVKAQKAFITRCKANSEATLGTYQGDAVLGEGASESLHVKDYKY
Sbjct: 301 QQSTLKAWGGKTENVVKAQKAFITRCKANSEATLGTYQGDAVLGEGASESLHVKDYKY 358
>AK071547
Length = 358
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/358 (89%), Positives = 344/358 (96%)
Query: 1 MSAYCGKYKDELIKNAAYIGTPGKGILAADESTGTIGKRFASINVENVEENRRSLRELLF 60
MSAYCGKYKDELIKNAAYIGTPGKGILAADESTGTIGKRFASINVENVE+NRR+ RELLF
Sbjct: 1 MSAYCGKYKDELIKNAAYIGTPGKGILAADESTGTIGKRFASINVENVEDNRRAFRELLF 60
Query: 61 TTPGALQHLSGVILFEETLYQKTKDGKPFVDVLKEGGVLPGIKVDKGTVEVAGTNKETTT 120
TPGALQ++SGVILF+ETLYQKTKDGKPFVDVLKE G LPGIKVDKGT+EVAGT+KETTT
Sbjct: 61 CTPGALQYISGVILFDETLYQKTKDGKPFVDVLKEAGALPGIKVDKGTIEVAGTDKETTT 120
Query: 121 QGHDDLGKRCAKYYEAGARFAKWRAVLKIGPNEPSQLSIDLNAQGLARYAIICQENGLVP 180
QGHDDLGK+CAKYYEAGARFAKWRAVLKIGPN+PSQL+IDLNAQGLA YAIICQENGLVP
Sbjct: 121 QGHDDLGKQCAKYYEAGARFAKWRAVLKIGPNQPSQLAIDLNAQGLACYAIICQENGLVP 180
Query: 181 IVEPEILVDGSHDIERCAYVTEKVLAACYKALNEHHVLLEGSLLKPNMVTPGSESKKVSP 240
IVEPEILVDG HDI+RCAYV+E VLAACYKALNEHHVLLEG+LLKPNMVTPGS++KKV+P
Sbjct: 181 IVEPEILVDGPHDIDRCAYVSEVVLAACYKALNEHHVLLEGTLLKPNMVTPGSDAKKVAP 240
Query: 241 QLIAEYTVRALQRTVPAAVPAIVFLSGGQSEEEATVNLNAMNKLSTKKPWALSFSFGRAL 300
++IAEYTVR LQRTVP AVPAIVFLSGGQSEEEAT+NLNAMNKLS KKPW+LSFSFGRAL
Sbjct: 241 EVIAEYTVRTLQRTVPPAVPAIVFLSGGQSEEEATLNLNAMNKLSAKKPWSLSFSFGRAL 300
Query: 301 QQSTLKAWGGKTENVVKAQKAFITRCKANSEATLGTYQGDAVLGEGASESLHVKDYKY 358
QQSTLKAW GKTENV KA+ AF+ RCKANSEATLGTY+GDAVLGEGA+ESLHVKDYKY
Sbjct: 301 QQSTLKAWAGKTENVEKARAAFLVRCKANSEATLGTYKGDAVLGEGAAESLHVKDYKY 358
>Os05g0402700 Similar to Fructose-bisphosphate aldolase, cytoplasmic isozyme (EC
4.1.2.13)
Length = 333
Score = 600 bits (1548), Expect = e-172, Method: Compositional matrix adjust.
Identities = 288/306 (94%), Positives = 301/306 (98%)
Query: 1 MSAYCGKYKDELIKNAAYIGTPGKGILAADESTGTIGKRFASINVENVEENRRSLRELLF 60
MSAYCGKYKDELIKNAAYIGTPGKGILAADESTGTIGKRFASINVENVEENRRSLRELLF
Sbjct: 1 MSAYCGKYKDELIKNAAYIGTPGKGILAADESTGTIGKRFASINVENVEENRRSLRELLF 60
Query: 61 TTPGALQHLSGVILFEETLYQKTKDGKPFVDVLKEGGVLPGIKVDKGTVEVAGTNKETTT 120
TPGALQ+LSGVILFEETLYQKTKDGKPFVDVLKEGGVLPGIKVDKGT+EVAGT KETTT
Sbjct: 61 CTPGALQYLSGVILFEETLYQKTKDGKPFVDVLKEGGVLPGIKVDKGTIEVAGTEKETTT 120
Query: 121 QGHDDLGKRCAKYYEAGARFAKWRAVLKIGPNEPSQLSIDLNAQGLARYAIICQENGLVP 180
QGHDDLGKRCAKYYEAGARFAKWRAVLKIGPNEPSQL+IDLNAQGLARYAIICQENGLVP
Sbjct: 121 QGHDDLGKRCAKYYEAGARFAKWRAVLKIGPNEPSQLAIDLNAQGLARYAIICQENGLVP 180
Query: 181 IVEPEILVDGSHDIERCAYVTEKVLAACYKALNEHHVLLEGSLLKPNMVTPGSESKKVSP 240
IVEPEILVDG HDI+RCAYV+E VLAACYKALNEHHVLLEG+LLKPNMVTPGS++KKVSP
Sbjct: 181 IVEPEILVDGPHDIDRCAYVSEVVLAACYKALNEHHVLLEGTLLKPNMVTPGSDAKKVSP 240
Query: 241 QLIAEYTVRALQRTVPAAVPAIVFLSGGQSEEEATVNLNAMNKLSTKKPWALSFSFGRAL 300
++IAEYTVR LQRTVPAAVPAIVFLSGGQSEEEAT+NLNAMNKLSTKKPW+LSFSFGRAL
Sbjct: 241 EVIAEYTVRTLQRTVPAAVPAIVFLSGGQSEEEATLNLNAMNKLSTKKPWSLSFSFGRAL 300
Query: 301 QQSTLK 306
QQSTL+
Sbjct: 301 QQSTLR 306
>Os08g0120600 Similar to Fructose-bisphosphate aldolase, cytoplasmic isozyme (EC
4.1.2.13)
Length = 362
Score = 575 bits (1482), Expect = e-164, Method: Compositional matrix adjust.
Identities = 287/362 (79%), Positives = 319/362 (88%), Gaps = 4/362 (1%)
Query: 1 MSAYCGKYKDELIKNAAYIGTPGKGILAADESTGTIGKRFASINVENVEENRRSLRELLF 60
MSAYCGKYKDELI+NAAYIGTPGKGILAADESTGTIGKR ASI VENVEENRR+LRELLF
Sbjct: 1 MSAYCGKYKDELIRNAAYIGTPGKGILAADESTGTIGKRLASIGVENVEENRRALRELLF 60
Query: 61 TTPGALQHLSGVILFEETLYQKTKDGKPFVDVLKEGGVLPGIKVDKGTVEVAGTNKETTT 120
T PGAL LSGVILFEETLYQ T+DG PFVDVL GVL GIKVDKGTVE+AGT++ETTT
Sbjct: 61 TAPGALDCLSGVILFEETLYQSTRDGTPFVDVLAAAGVLAGIKVDKGTVELAGTDRETTT 120
Query: 121 QGHDDLGKRCAKYYEAGARFAKWRAVLKIG--PNEPSQLSIDLNAQGLARYAIICQENGL 178
QGHD LG+RC +YY AGARFAKWRAVL IG + PSQL++D NAQGLARYAIICQENGL
Sbjct: 121 QGHDGLGERCRRYYAAGARFAKWRAVLSIGRASSRPSQLAVDANAQGLARYAIICQENGL 180
Query: 179 VPIVEPEILVDGSHDIERCAYVTEKVLAACYKALNEHHVLLEGSLLKPNMVTPGSESKKV 238
VPIVEPEILVDG H IE CA VTE+VLAACYKAL++HHVLLEG+LLKPNMVTPGS++ +
Sbjct: 181 VPIVEPEILVDGEHGIEACAEVTERVLAACYKALSDHHVLLEGTLLKPNMVTPGSDAARA 240
Query: 239 SPQLIAEYTVRALQRTVPAAVPAIVFLSGGQSEEEATVNLNAMNKLST--KKPWALSFSF 296
P+++AE+TVRAL RTVP AVPAIVFLSGGQSEEEAT NLNAMN++++ KKPW+L+FSF
Sbjct: 241 PPEVVAEHTVRALLRTVPPAVPAIVFLSGGQSEEEATRNLNAMNQVASRGKKPWSLTFSF 300
Query: 297 GRALQQSTLKAWGGKTENVVKAQKAFITRCKANSEATLGTYQGDAVLGEGASESLHVKDY 356
GRALQQSTLKAW GK ENV KAQ A + RC+ANS+ATLG Y GDA GEG SE+LHVKDY
Sbjct: 301 GRALQQSTLKAWAGKAENVGKAQAALLARCRANSQATLGAYAGDAAAGEGVSENLHVKDY 360
Query: 357 KY 358
KY
Sbjct: 361 KY 362
>Os06g0608700 Similar to Fructose-bisphosphate aldolase, cytoplasmic isozyme (EC
4.1.2.13)
Length = 358
Score = 550 bits (1417), Expect = e-157, Method: Compositional matrix adjust.
Identities = 278/360 (77%), Positives = 306/360 (85%), Gaps = 4/360 (1%)
Query: 1 MSAYCGKYKDELIKNAAYIGTPGKGILAADESTGTIGKRFASINVENVEENRRSLRELLF 60
MSA+ GKY DELIK A YI TPGKGILAADESTGTIGKR ASINVENVE NR++LRELLF
Sbjct: 1 MSAFVGKYADELIKTAKYIATPGKGILAADESTGTIGKRLASINVENVEPNRQALRELLF 60
Query: 61 TTPGALQHLSGVILFEETLYQKTKDGKPFVDVLKEGGVLPGIKVDKGTVEVAGTNKETTT 120
TTPGA Q+LSGVILFEETLYQ T G PFVDVLK GGV+PGIKVDKGTV++AGTN ETTT
Sbjct: 61 TTPGAFQYLSGVILFEETLYQSTAAGTPFVDVLKAGGVVPGIKVDKGTVDIAGTNGETTT 120
Query: 121 QGHDDLGKRCAKYYEAGARFAKWRAVLKIGP-NEPSQLSIDLNAQGLARYAIICQENGLV 179
QG D LG RCAKYYEAGARFAKWRAVLKIG EPS+L++ NA+GLARYA+ICQENGLV
Sbjct: 121 QGLDSLGARCAKYYEAGARFAKWRAVLKIGAAGEPSELAVKQNAEGLARYALICQENGLV 180
Query: 180 PIVEPEILVDGSHDIERCAYVTEKVLAACYKALNEHHVLLEGSLLKPNMVTPGSESKKVS 239
PIVEPEIL DG+HDI+ CA VTE+VLAA YK+LN+H VLLEG+LLKPNMVTPGS+S KV
Sbjct: 181 PIVEPEILTDGAHDIKTCAAVTERVLAAVYKSLNDHKVLLEGTLLKPNMVTPGSDSPKVG 240
Query: 240 PQLIAEYTVRALQRTVPAAVPAIVFLSGGQSEEEATVNLNAMNKLSTKKPWALSFSFGRA 299
++I EYTV AL+RTVP AVP IVFLSGGQSEEEA+ NLNAMNKL KPW L+FSFGRA
Sbjct: 241 AEVIGEYTVAALRRTVPPAVPGIVFLSGGQSEEEASQNLNAMNKLEVLKPWTLTFSFGRA 300
Query: 300 LQQSTLKAWGGKTENVVKAQKAFITRCKANSEATLGTYQGDAVLGEGA-SESLHVKDYKY 358
LQQST+K WGGK ENV AQ AF+ RCKANSEATLG Y G A G+ A SESL+VK Y Y
Sbjct: 301 LQQSTIKKWGGKKENVAAAQAAFLARCKANSEATLGKYGGAA--GDAATSESLYVKGYTY 358
>Os11g0171300 Fructose-bisphosphate aldolase, chloroplast precursor (EC 4.1.2.13)
(ALDP)
Length = 388
Score = 392 bits (1006), Expect = e-109, Method: Compositional matrix adjust.
Identities = 201/359 (55%), Positives = 249/359 (69%), Gaps = 5/359 (1%)
Query: 1 MSAYCGKYKDELIKNAAYIGTPGKGILAADESTGTIGKRFASINVENVEENRRSLRELLF 60
M G Y DEL+K A I +PG+GILA DES T GKR ASI +EN E NR++ R LL
Sbjct: 34 MVVRAGAYDDELVKTAKTIASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLV 93
Query: 61 TTPGALQHLSGVILFEETLYQKTKDGKPFVDVLKEGGVLPGIKVDKGTVEVAGTNKETTT 120
T PG Q++SG ILFEETLYQ T DGK VD+L E ++PGIKVDKG V +AG+N E+
Sbjct: 94 TAPGLGQYISGAILFEETLYQSTVDGKKIVDILTEQKIVPGIKVDKGLVPLAGSNNESWC 153
Query: 121 QGHDDLGKRCAKYYEAGARFAKWRAVLKIGPNEPSQLSIDLNAQGLARYAIICQENGLVP 180
QG D L R A YY+ GARFAKWR V+ I PN PS+L++ A GLARYA I Q+NGLVP
Sbjct: 154 QGLDGLASREAAYYQQGARFAKWRTVVSI-PNGPSELAVKEAAWGLARYAAISQDNGLVP 212
Query: 181 IVEPEILVDGSHDIERCAYVTEKVLAACYKALNEHHVLLEGSLLKPNMVTPGSESK-KVS 239
IVEPEIL+DG H I+R V +KV A + + E++V+ EG LLKP+MVTPG+E K + +
Sbjct: 213 IVEPEILLDGEHGIDRTFEVAQKVWAETFFYMAENNVMFEGILLKPSMVTPGAECKDRAT 272
Query: 240 PQLIAEYTVRALQRTVPAAVPAIVFLSGGQSEEEATVNLNAMNKLSTKKPWALSFSFGRA 299
P+ +++YT++ L R +P AVP I+FLSGGQSE EAT NLNAMN+ PW +SFS+ RA
Sbjct: 273 PEQVSDYTLKLLHRRIPPAVPGIMFLSGGQSEVEATQNLNAMNQ--GPNPWHVSFSYARA 330
Query: 300 LQQSTLKAWGGKTENVVKAQKAFITRCKANSEATLGTYQGDAVLGEGASESLHVKDYKY 358
LQ + LK WGG+ ENV AQ A + R KANS A LG Y D E A E + VK+Y Y
Sbjct: 331 LQNTCLKTWGGQPENVKAAQDALLLRAKANSLAQLGKYTSDGEAAE-AKEGMFVKNYVY 388
>Os01g0118000 Similar to Fructose-bisphosphate aldolase (EC 4.1.2.13) (Fragment)
Length = 388
Score = 385 bits (989), Expect = e-107, Method: Compositional matrix adjust.
Identities = 199/352 (56%), Positives = 247/352 (70%), Gaps = 5/352 (1%)
Query: 8 YKDELIKNAAYIGTPGKGILAADESTGTIGKRFASINVENVEENRRSLRELLFTTPGALQ 67
Y DEL+ A + +PG+GILA DES T GKR ASI ++N E NR++ R+LL TT G +
Sbjct: 41 YADELVSTAKSVASPGRGILAIDESNATCGKRLASIGLDNTEVNRQAYRQLLLTTAGLGE 100
Query: 68 HLSGVILFEETLYQKTKDGKPFVDVLKEGGVLPGIKVDKGTVEVAGTNKETTTQGHDDLG 127
++SG ILFEETLYQ T DGK FVD LK+ ++PGIKVDKG V + G+N E+ QG D L
Sbjct: 101 YISGAILFEETLYQSTTDGKKFVDCLKDQNIMPGIKVDKGLVPLPGSNNESWCQGLDGLA 160
Query: 128 KRCAKYYEAGARFAKWRAVLKIGPNEPSQLSIDLNAQGLARYAIICQENGLVPIVEPEIL 187
RCA+YY+ GARFAKWR V+ I P PS L++ A GLARYA I Q+NGLVPIVEPEIL
Sbjct: 161 SRCAEYYKQGARFAKWRTVVSI-PCGPSALAVKEAAWGLARYAAIAQDNGLVPIVEPEIL 219
Query: 188 VDGSHDIERCAYVTEKVLAACYKALNEHHVLLEGSLLKPNMVTPGSESK-KVSPQLIAEY 246
+DG H IER V EKV + + L +++VL EG LLKP+MVTPG+E K K +P+ IA++
Sbjct: 220 LDGDHAIERTLEVAEKVWSEVFFYLAQNNVLFEGILLKPSMVTPGAEHKQKATPEAIAKH 279
Query: 247 TVRALQRTVPAAVPAIVFLSGGQSEEEATVNLNAMNKLSTKKPWALSFSFGRALQQSTLK 306
T+ L+R VP AVP I+FLSGGQSE EAT+NLNAMN+ PW +SFS+ RALQ S LK
Sbjct: 280 TLTMLRRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQ--EPNPWHVSFSYARALQNSVLK 337
Query: 307 AWGGKTENVVKAQKAFITRCKANSEATLGTYQGDAVLGEGASESLHVKDYKY 358
W G+ ENV AQKA + R KANS A LG Y G+ E A + + K Y Y
Sbjct: 338 TWQGRPENVEAAQKALLVRAKANSLAQLGRYTGEGESDE-AKKGMFQKGYTY 388
>AK105927
Length = 463
Score = 384 bits (986), Expect = e-107, Method: Compositional matrix adjust.
Identities = 197/351 (56%), Positives = 245/351 (69%), Gaps = 7/351 (1%)
Query: 1 MSAYCGKYKDELIKNAAYIGTPGKGILAADESTGTIGKRFASINVENVEENRRSLRELLF 60
M G Y DEL+K A I +PG+GILA DES T GKR ASI +EN E NR++ R LL
Sbjct: 34 MVVRAGAYDDELVKTAKTIASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLV 93
Query: 61 TTPGALQHLSGVILFEETLYQKTKDGKPFVDVLKEGGVLPGIKVDKGTVEVAGTNKETTT 120
T PG Q++SG ILFEETLYQ T DGK VD+L E ++PGIKVDKG V +AG+N E+
Sbjct: 94 TAPGLGQYISGAILFEETLYQSTVDGKKIVDILTEQKIVPGIKVDKGLVPLAGSNNESWC 153
Query: 121 QGHDDLGKRCAKYYEAGARFAKWRAVLKIGPNEPSQLSIDLNAQGLARYAIICQENGLVP 180
QG D L R A YY+ GARFAKWR V+ I PN PS+L++ A GLARYA I Q+NGLVP
Sbjct: 154 QGLDGLASREAAYYQQGARFAKWRTVVSI-PNGPSELAVKEAAWGLARYAAISQDNGLVP 212
Query: 181 IVEPEILVDGSHDIERCAYVTEKVLAACYKALNEHHVLLEGSLLKPNMVTPGSESK-KVS 239
IVEPEIL+DG H I+R V +KV A + + E++V+ EG LLKP+MVTPG+E K + +
Sbjct: 213 IVEPEILLDGEHGIDRTFEVAQKVWAETFFYMAENNVMFEGILLKPSMVTPGAECKDRAT 272
Query: 240 PQLIAEYTVRALQRTVPAAVPAIVFLSGGQSEEEATVNLNAMNKLSTKKPWALSFSFGRA 299
P+ +++YT++ L R +P AVP I+FLSGGQSE EAT NLNAMN+ PW +SFS+ RA
Sbjct: 273 PEQVSDYTLKLLHRRIPPAVPGIMFLSGGQSEVEATQNLNAMNQ--GPNPWHVSFSYARA 330
Query: 300 LQQSTLKAWGGKTENVVKAQKAFITRCKANSEATLGTYQGDAVLGEGASES 350
LQ + LK WGG+ ENV AQ A + R KANS A LG Y D GE A+ +
Sbjct: 331 LQNTCLKTWGGQPENVKAAQDALLLRAKANSLAQLGKYTSD---GEAAAAT 378
>Os09g0113100
Length = 192
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 61/73 (83%), Gaps = 2/73 (2%)
Query: 152 NEPSQLSIDLNAQGLARYAIICQENGLVPIVEPEILVDGSHDIERCAYVTEKVLAACYKA 211
++PSQL+ + NAQG+ARY IICQENGLVPIV PEILVDG H IE C VTE+VLAACYK
Sbjct: 105 SKPSQLA-NTNAQGVARYTIICQENGLVPIVGPEILVDGEHGIEVCTEVTERVLAACYKV 163
Query: 212 LNEHHVLLEGSLL 224
L++ HVLLEG+ L
Sbjct: 164 LSD-HVLLEGTTL 175
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.132 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,823,917
Number of extensions: 480170
Number of successful extensions: 805
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 793
Number of HSP's successfully gapped: 9
Length of query: 358
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 256
Effective length of database: 11,709,973
Effective search space: 2997753088
Effective search space used: 2997753088
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 157 (65.1 bits)