BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0101000 Os08g0101000|AK107456
(362 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0101000 Transcriptional factor B3 family protein 590 e-169
Os04g0676600 Similar to Transcription factor (Fragment) 179 3e-45
Os04g0676650 170 2e-42
Os01g0713600 Transcriptional factor B3 family protein 121 1e-27
Os01g0911700 Similar to Regulatory protein viviparous-1 115 3e-26
Os07g0679700 Transcriptional factor B3 family protein 80 2e-15
>Os08g0101000 Transcriptional factor B3 family protein
Length = 362
Score = 590 bits (1521), Expect = e-169, Method: Compositional matrix adjust.
Identities = 293/362 (80%), Positives = 293/362 (80%)
Query: 1 MGQMXXXXXXXXXHPYHYQALLAAVHQQTVPFPNPFPAPSSGAEXXXXXXXXXXXXXXXX 60
MGQM HPYHYQALLAAVHQQTVPFPNPFPAPSSGAE
Sbjct: 1 MGQMDGGDGGGGGHPYHYQALLAAVHQQTVPFPNPFPAPSSGAEPPHPHNHNHNHNHNHN 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXXXRGFADWXXXXXXXXXXXXXXXXXPSNAVHYSFS 120
RGFADW PSNAVHYSFS
Sbjct: 61 IHNSHNHNHNHNAAPHPCHTPTPTPTPRGFADWSASTSAFTSLAAHSSTAPSNAVHYSFS 120
Query: 121 PCYAFWTHYMLNKNAYPTSFPAPHDDHLRLANNNHPRDAPGPASSYGVESFTSPSMAPNI 180
PCYAFWTHYMLNKNAYPTSFPAPHDDHLRLANNNHPRDAPGPASSYGVESFTSPSMAPNI
Sbjct: 121 PCYAFWTHYMLNKNAYPTSFPAPHDDHLRLANNNHPRDAPGPASSYGVESFTSPSMAPNI 180
Query: 181 CTHMPPIEGPISAKEDKKPEILPRVVKSSDELETRNSNVEFHSETVGTLPESKQGHDSRA 240
CTHMPPIEGPISAKEDKKPEILPRVVKSSDELETRNSNVEFHSETVGTLPESKQGHDSRA
Sbjct: 181 CTHMPPIEGPISAKEDKKPEILPRVVKSSDELETRNSNVEFHSETVGTLPESKQGHDSRA 240
Query: 241 TKLLNSGEYQVILRKELTKSDVGNVGRIVLPKKDAEASLPPLLQRDPLILHMDDMVLPVT 300
TKLLNSGEYQVILRKELTKSDVGNVGRIVLPKKDAEASLPPLLQRDPLILHMDDMVLPVT
Sbjct: 241 TKLLNSGEYQVILRKELTKSDVGNVGRIVLPKKDAEASLPPLLQRDPLILHMDDMVLPVT 300
Query: 301 WKFKYRYWPNNKSRMYILDSAGEFLKTHGLQAGDVIIIYKNLAPGKFIIRGEKAIHQQTT 360
WKFKYRYWPNNKSRMYILDSAGEFLKTHGLQAGDVIIIYKNLAPGKFIIRGEKAIHQQTT
Sbjct: 301 WKFKYRYWPNNKSRMYILDSAGEFLKTHGLQAGDVIIIYKNLAPGKFIIRGEKAIHQQTT 360
Query: 361 NP 362
NP
Sbjct: 361 NP 362
>Os04g0676600 Similar to Transcription factor (Fragment)
Length = 433
Score = 179 bits (454), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 89/169 (52%), Positives = 116/169 (68%), Gaps = 5/169 (2%)
Query: 189 GPISAKEDKKPEI--LPRVVKSSDELETRNSNVEFHSETVGTLPESKQGHDSRATKLLNS 246
GPI AK+ KK +I P V++ SD +N ++ +T + P S + + +T N
Sbjct: 234 GPIDAKKAKKSDIKDQPIVLRRSDTESEKNDELD---QTPASEPSSMSHNSANSTIRFNC 290
Query: 247 GEYQVILRKELTKSDVGNVGRIVLPKKDAEASLPPLLQRDPLILHMDDMVLPVTWKFKYR 306
EY+VILRKELT SDVGN+GRIV+PK+DAEA LP L QR+ ++L MDD L TW FKYR
Sbjct: 291 REYRVILRKELTNSDVGNIGRIVMPKRDAEAHLPALHQREGVMLKMDDFKLETTWNFKYR 350
Query: 307 YWPNNKSRMYILDSAGEFLKTHGLQAGDVIIIYKNLAPGKFIIRGEKAI 355
+WPNNKSRMY+L+S G F+K H LQ GD+ IIYK+ K ++RGEKAI
Sbjct: 351 FWPNNKSRMYVLESTGGFVKQHVLQTGDIFIIYKSSESEKLVVRGEKAI 399
>Os04g0676650
Length = 555
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 85/168 (50%), Positives = 110/168 (65%), Gaps = 2/168 (1%)
Query: 189 GPISAKEDKKPEIL-PRVVKSSDELETRNSNVEFHSETVGTLPESKQGHDSRATKLLNSG 247
GP K+ KK + P +V ++E+ ++ V P Q ++ + N
Sbjct: 355 GPTYTKKAKKSNVKDPPIVFRRSDMESEKNDDNPDQTPVSEPPSMNQNGENLIIRF-NCR 413
Query: 248 EYQVILRKELTKSDVGNVGRIVLPKKDAEASLPPLLQRDPLILHMDDMVLPVTWKFKYRY 307
EY+VILRKELT SDVGN+GRIV+PK+DAEA LP L QR+ + L MDD TW FKYR+
Sbjct: 414 EYRVILRKELTNSDVGNIGRIVMPKRDAEAHLPALHQREGVTLKMDDFKFETTWNFKYRF 473
Query: 308 WPNNKSRMYILDSAGEFLKTHGLQAGDVIIIYKNLAPGKFIIRGEKAI 355
WPNNKSRMY+L+S G F+K HGLQ GD+ IIYK+ GKF++RGEKAI
Sbjct: 474 WPNNKSRMYVLESTGGFVKHHGLQTGDIFIIYKSSESGKFVVRGEKAI 521
>Os01g0713600 Transcriptional factor B3 family protein
Length = 289
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 78/112 (69%), Gaps = 1/112 (0%)
Query: 250 QVILRKELTKSDVGNVGRIVLPKKDAEASLPPLLQRD-PLILHMDDMVLPVTWKFKYRYW 308
+VIL+KEL SDV +GRIVLPKK+AEA LP L +D L M D+ W FKYRYW
Sbjct: 65 RVILQKELRYSDVSQLGRIVLPKKEAEAYLPILTSKDGKKSLCMHDLQNAQLWTFKYRYW 124
Query: 309 PNNKSRMYILDSAGEFLKTHGLQAGDVIIIYKNLAPGKFIIRGEKAIHQQTT 360
PNNKSRMY+L++ G++++TH LQ GD I+IYK+ +F+I +KA QQ
Sbjct: 125 PNNKSRMYVLENTGDYVRTHDLQLGDSIVIYKDDENNRFVIGAKKAGDQQAA 176
>Os01g0911700 Similar to Regulatory protein viviparous-1
Length = 704
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 250 QVILRKELTKSDVGNVGRIVLPKKDAEASLPPLLQRDPLILHMDDMVLPVTWKFKYRYWP 309
+ +L+K L +SDVG++GRIVLPK +AE LP L RD + + M+D+ W +YR+WP
Sbjct: 511 RFLLQKVLKQSDVGSLGRIVLPK-EAEVHLPELKTRDGVSIPMEDIGTSQVWNMRYRFWP 569
Query: 310 NNKSRMYILDSAGEFLKTHGLQAGDVIIIYKNLAPGKFIIRGEK 353
NNKSRMY+L++ G+F++++ LQ GD I+IY ++ GK++IRG K
Sbjct: 570 NNKSRMYLLENTGDFVRSNELQEGDFIVIYSDIKSGKYLIRGVK 613
>Os07g0679700 Transcriptional factor B3 family protein
Length = 949
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Query: 252 ILRKELTKSDVGNVGRIVLPKKDAEASLPPLLQRDPLILHMDDMVLPVTWKFKYRYWPNN 311
+ K L+ SD G +GR+VLPK AEA PP+ Q + L + D W F++R+WPNN
Sbjct: 362 LFEKVLSASDAGRIGRLVLPKACAEAYFPPISQPEGRPLTIQD-AKGKEWHFQFRFWPNN 420
Query: 312 KSRMYILDSAGEFLKTHGLQAGDVIIIYKNLAPGKFIIRGEKAIH 356
SRMY+L+ +++ LQAGD + + GK ++ KA +
Sbjct: 421 NSRMYVLEGVTPCIQSLQLQAGDTVTFSRIEPGGKLVMGFRKATN 465
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.133 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,139,229
Number of extensions: 471369
Number of successful extensions: 1329
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1333
Number of HSP's successfully gapped: 7
Length of query: 362
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 260
Effective length of database: 11,709,973
Effective search space: 3044592980
Effective search space used: 3044592980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)