Os04g0676600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcription factor (Fragment).
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Os04g0676600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transcription factor (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.11 | 0.439 | 2.87 | 0.0161 | 0.433 | 0.377 | -1.73 | -1.51 | 0.106 | 13.6 | 4.507 | 252 | -- | -- |
| 89.46 | 0.441 | 2.88 | -0.027 | 0.112 | 0.139 | -0.103 | -- | 0.107 | 13 | 18.87 | 284 | -- | -- |
| 88.63 | 0.438 | 2.88 | -0.0419 | 0.355 | 0.307 | -- | -0.0609 | 0.0892 | 13.9 | 4.7 | 253 | -- | -- |
| 88.63 | 0.438 | 2.87 | -0.0337 | 0.356 | 0.304 | -- | -- | 0.0927 | 14 | 4.795 | 253 | -- | -- |
| 89.93 | 0.442 | 2.87 | -0.0189 | -- | 0.0668 | -- | -0.0699 | 0.0995 | -- | 19.33 | 274 | -- | -- |
| 89.9 | 0.445 | 2.87 | -0.0277 | 0.00377 | -- | -0.239 | -- | 0.0872 | 9.99 | -- | -- | -- | -- |
| 90.09 | 0.444 | 2.88 | -0.0359 | 0.0268 | -- | -- | -- | 0.0874 | 15.6 | -- | -- | -- | -- |
| 89.92 | 0.442 | 2.87 | -0.0299 | -- | 0.0619 | -- | -- | 0.0918 | -- | 19.63 | 271 | -- | -- |
| 88.6 | 0.438 | 2.87 | -- | 0.44 | 0.374 | -- | -- | 0.0947 | 14.1 | 4.79 | 253 | -- | -- |
| 90.13 | 0.444 | 2.88 | -0.0371 | -- | -- | -- | -- | 0.0867 | -- | -- | -- | -- | -- |
| 90.12 | 0.444 | 2.87 | -- | 0.0275 | -- | -- | -- | 0.0914 | 15.6 | -- | -- | -- | -- |
| 89.95 | 0.442 | 2.87 | -- | -- | 0.0659 | -- | -- | 0.0937 | -- | 19.64 | 271 | -- | -- |
| 90.16 | 0.443 | 2.87 | -- | -- | -- | -- | -- | 0.0908 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 80.32 | humidity | 90 | 90 | > th | dose dependent | rect. | 8 | 2 |
| 3 | 80.36 | humidity | 90 | 90 | > th | dose independent | rect. | 8 | 2 |
| 4 | 80.39 | wind | 5 | 10 | > th | dose independent | rect. | 10 | 1 |
| 8 | 80.39 | wind | 5 | 10 | > th | dose dependent | rect. | 10 | 1 |
| 21 | 80.47 | wind | 7 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 36 | 81.29 | wind | 9 | 90 | > th | dose dependent | rect. | 21 | 13 |
| 111 | 84.11 | wind | 9 | 10 | > th | dose dependent | rect. | 17 | 1 |
| 116 | 84.19 | wind | 7 | 90 | > th | dose independent | rect. | 23 | 11 |
| 199 | 86.01 | wind | 1 | 1440 | < th | dose dependent | rect. | 19 | 1 |
| 211 | 86.13 | wind | 1 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 233 | 86.31 | wind | 1 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 244 | 86.43 | humidity | 70 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 256 | 86.46 | radiation | 10 | 270 | < th | dose dependent | rect. | 6 | 12 |
| 259 | 86.51 | humidity | 70 | 10 | < th | dose independent | rect. | 19 | 1 |
| 278 | 86.53 | wind | 1 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 279 | 86.53 | wind | 7 | 10 | > th | dose independent | rect. | 17 | 18 |
| 284 | 86.54 | humidity | 70 | 4320 | > th | dose independent | rect. | 22 | 7 |
| 285 | 86.56 | wind | 9 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 317 | 86.56 | wind | 9 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 350 | 86.58 | wind | 1 | 720 | < th | dose dependent | rect. | 16 | 1 |
| 354 | 86.59 | humidity | 70 | 10 | < th | dose dependent | rect. | 19 | 1 |
| 371 | 86.62 | wind | 1 | 270 | < th | dose independent | rect. | 19 | 1 |
| 374 | 86.62 | wind | 1 | 270 | < th | dose dependent | rect. | 19 | 1 |
| 377 | 86.62 | radiation | 10 | 270 | < th | dose dependent | rect. | 13 | 20 |
| 379 | 86.63 | wind | 1 | 720 | < th | dose dependent | rect. | 16 | 4 |
| 381 | 86.64 | wind | 1 | 720 | < th | dose independent | rect. | 17 | 1 |
| 383 | 86.64 | radiation | 10 | 270 | < th | dose dependent | rect. | 14 | 1 |
| 393 | 86.70 | radiation | 1 | 270 | < th | dose independent | rect. | 14 | 1 |
| 405 | 86.73 | wind | 1 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 414 | 86.76 | wind | 7 | 90 | > th | dose independent | rect. | 17 | 17 |
| 422 | 86.79 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 1 |
| 424 | 86.79 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 1 |
| 426 | 86.81 | humidity | 50 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 467 | 86.96 | temperature | 25 | 10 | > th | dose dependent | rect. | 19 | 4 |
| 470 | 86.97 | temperature | 25 | 10 | > th | dose dependent | rect. | 19 | 12 |
| 475 | 86.98 | temperature | 25 | 10 | > th | dose dependent | rect. | 19 | 2 |
| 482 | 86.99 | wind | 5 | 90 | > th | dose dependent | rect. | 17 | 18 |
| 487 | 87.00 | temperature | 25 | 10 | > th | dose dependent | rect. | 19 | 10 |
| 494 | 87.03 | wind | 9 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 495 | 87.04 | wind | 1 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 513 | 87.09 | wind | 9 | 10 | > th | dose independent | rect. | 17 | 1 |
| 522 | 87.10 | wind | 9 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 528 | 87.12 | humidity | 70 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 538 | 87.12 | humidity | 70 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 561 | 87.14 | wind | 5 | 10 | > th | dose dependent | rect. | 17 | 18 |
| 562 | 87.15 | radiation | 1 | 270 | < th | dose independent | rect. | 6 | 1 |
| 563 | 87.15 | radiation | 1 | 270 | < th | dose independent | rect. | 6 | 11 |
| 564 | 87.15 | radiation | 10 | 270 | < th | dose dependent | sin | 23 | NA |
| 567 | 87.15 | radiation | 10 | 270 | < th | dose dependent | rect. | 6 | 3 |
| 585 | 87.17 | humidity | 80 | 270 | > th | dose dependent | rect. | 14 | 1 |
| 601 | 87.21 | radiation | 1 | 270 | < th | dose independent | rect. | 14 | 3 |
| 633 | 87.31 | radiation | 10 | 270 | < th | dose dependent | rect. | 11 | 7 |
| 653 | 87.35 | wind | 9 | 4320 | > th | dose dependent | rect. | 14 | 3 |
| 705 | 87.47 | temperature | 25 | 10 | > th | dose independent | rect. | 19 | 16 |
| 710 | 87.47 | radiation | 10 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 725 | 87.49 | radiation | 10 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 728 | 87.50 | wind | 9 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 746 | 87.52 | radiation | 1 | 90 | < th | dose independent | rect. | 16 | 1 |
| 757 | 87.53 | radiation | 1 | 90 | < th | dose dependent | rect. | 16 | 1 |
| 766 | 87.54 | temperature | 10 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 769 | 87.54 | temperature | 30 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 773 | 87.54 | humidity | 50 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 775 | 87.54 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 779 | 87.54 | radiation | 1 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 799 | 87.54 | temperature | 10 | 1440 | > th | dose independent | rect. | 20 | 23 |
| 802 | 87.54 | radiation | 1 | 1440 | < th | dose dependent | rect. | 19 | 1 |
| 833 | 87.57 | radiation | 10 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 835 | 87.58 | humidity | 80 | 10 | > th | dose independent | rect. | 16 | 2 |
| 840 | 87.58 | radiation | 10 | 270 | < th | dose independent | rect. | 13 | 20 |
| 845 | 87.59 | radiation | 10 | 270 | < th | dose dependent | no | NA | NA |
| 846 | 87.59 | radiation | 1 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 858 | 87.62 | temperature | 25 | 90 | > th | dose independent | rect. | 9 | 1 |
| 863 | 87.63 | wind | 9 | 4320 | > th | dose independent | rect. | 14 | 3 |
| 869 | 87.64 | wind | 9 | 43200 | < th | dose independent | rect. | 2 | 7 |
| 881 | 87.65 | wind | 9 | 4320 | < th | dose independent | rect. | 14 | 3 |
| 882 | 87.65 | radiation | 1 | 270 | < th | dose independent | rect. | 14 | 18 |
| 888 | 87.66 | humidity | 80 | 270 | > th | dose independent | rect. | 14 | 1 |
| 933 | 87.68 | temperature | 25 | 10 | > th | dose independent | rect. | 19 | 2 |
| 939 | 87.68 | wind | 9 | 43200 | > th | dose dependent | rect. | 3 | 5 |
| 957 | 87.70 | wind | 9 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 963 | 87.70 | radiation | 10 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 976 | 87.72 | humidity | 70 | 4320 | > th | dose independent | rect. | 19 | 13 |
| 985 | 87.73 | radiation | 10 | 270 | < th | dose dependent | rect. | 3 | 23 |