Os01g0911700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Regulatory protein viviparous-1.
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Os01g0911700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Regulatory protein viviparous-1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 151.76 | 0.579 | 3.89 | 0.0279 | 0.033 | 1.21 | -0.939 | -0.371 | -0.291 | 4.46 | 24.5 | 714 | -- | -- |
| 151.87 | 0.574 | 3.9 | -0.0319 | 0.0569 | 1.26 | -0.956 | -- | -0.311 | 4.88 | 24.2 | 724 | -- | -- |
| 153.1 | 0.576 | 3.89 | 0.0898 | 0.12 | 1.16 | -- | -0.526 | -0.285 | 10.2 | 24.39 | 674 | -- | -- |
| 153.31 | 0.577 | 3.9 | -0.0335 | 0.147 | 1.22 | -- | -- | -0.318 | 9.87 | 24.1 | 656 | -- | -- |
| 154.14 | 0.578 | 3.89 | 0.0473 | -- | 1.2 | -- | -0.463 | -0.284 | -- | 24.54 | 680 | -- | -- |
| 173.7 | 0.618 | 3.95 | -0.371 | 0.285 | -- | -0.0326 | -- | -0.547 | 9.71 | -- | -- | -- | -- |
| 173.7 | 0.617 | 3.95 | -0.372 | 0.285 | -- | -- | -- | -0.547 | 9.78 | -- | -- | -- | -- |
| 154.37 | 0.579 | 3.9 | -0.0272 | -- | 1.26 | -- | -- | -0.302 | -- | 24.28 | 704 | -- | -- |
| 153.29 | 0.577 | 3.9 | -- | 0.142 | 1.22 | -- | -- | -0.311 | 9.63 | 24.1 | 690 | -- | -- |
| 178.55 | 0.624 | 3.95 | -0.375 | -- | -- | -- | -- | -0.546 | -- | -- | -- | -- | -- |
| 177.36 | 0.623 | 3.94 | -- | 0.286 | -- | -- | -- | -0.505 | 9.88 | -- | -- | -- | -- |
| 154.39 | 0.579 | 3.9 | -- | -- | 1.27 | -- | -- | -0.298 | -- | 24.28 | 704 | -- | -- |
| 182.26 | 0.63 | 3.95 | -- | -- | -- | -- | -- | -0.505 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 147.91 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 2 | 148.59 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 6 | 149.13 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 24 | 19 |
| 10 | 149.32 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 16 | 149.46 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 31 | 149.88 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 12 |
| 39 | 150.01 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 48 | 150.15 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 4 | 18 |
| 86 | 150.64 | temperature | 25.0 | 720 | < th | dose dependent | sin | 6 | NA |
| 91 | 150.69 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 96 | 150.76 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 4 | 15 |
| 122 | 150.96 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 20 | 19 |
| 147 | 151.12 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 6 | 10 |
| 210 | 151.59 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 220 | 151.65 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 6 | 7 |
| 255 | 151.93 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 258 | 151.96 | temperature | 20.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 277 | 152.05 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 12 |
| 322 | 152.31 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 324 | 152.33 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 346 | 152.46 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 24 | 7 |
| 356 | 152.51 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 365 | 152.54 | temperature | 10.0 | 720 | > th | dose dependent | sin | 4 | NA |
| 366 | 152.55 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 372 | 152.57 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 9 |
| 391 | 152.64 | humidity | 80.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 413 | 152.73 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 426 | 152.78 | wind | 5.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 431 | 152.80 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 433 | 152.81 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 451 | 152.86 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 453 | 152.86 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 454 | 152.86 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 457 | 152.86 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 458 | 152.86 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 460 | 152.86 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 465 | 152.86 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 466 | 152.86 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 467 | 152.86 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 472 | 152.86 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 491 | 152.94 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 3 | 3 |
| 531 | 153.12 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 542 | 153.18 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 24 | 3 |
| 544 | 153.19 | temperature | 10.0 | 270 | > th | dose dependent | sin | 0 | NA |
| 567 | 153.30 | temperature | 30.0 | 270 | < th | dose dependent | sin | 0 | NA |
| 609 | 153.51 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 7 | 21 |
| 693 | 153.92 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 723 | 154.07 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 8 | 5 |
| 733 | 154.11 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 3 | 15 |
| 742 | 154.14 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 18 | 14 |
| 748 | 154.16 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 19 |
| 757 | 154.19 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 772 | 154.28 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 20 |
| 805 | 154.37 | wind | 9.0 | 4320 | < th | dose dependent | rect. | 2 | 1 |
| 845 | 154.52 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 862 | 154.60 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 886 | 154.65 | wind | 1.0 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 894 | 154.66 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 904 | 154.70 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 905 | 154.71 | temperature | 25.0 | 270 | < th | dose independent | rect. | 7 | 10 |
| 944 | 154.81 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 997 | 154.95 | temperature | 10.0 | 720 | > th | dose dependent | no | NA | NA |