BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0692200 Os07g0692200|Os07g0692200
         (199 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0692200  Protein of unknown function DUF588 family protein   235   1e-62
Os03g0298300  Protein of unknown function DUF588 family protein    96   1e-20
Os05g0344400  Protein of unknown function DUF588 family protein    87   5e-18
Os03g0817100  Protein of unknown function DUF588 family protein    75   4e-14

>Os07g0692200 Protein of unknown function DUF588 family protein
          Length = 199

 Score =  235 bits (600), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 128/199 (64%), Positives = 128/199 (64%)

Query: 1   MAMVASPDDIVKSXXXXXXXXXXXXXXXAHKDKAAYNPYSGCPAHXXXXXXXXXXXXXXX 60
           MAMVASPDDIVKS               AHKDKAAYNPYSGCPAH               
Sbjct: 1   MAMVASPDDIVKSPLPPPPPPPPPPLPPAHKDKAAYNPYSGCPAHGGDDGLDGIVLVLRA 60

Query: 61  XXXXXXXXXXXXXXSCRHGDWMEFTRYQEYRYLLGVAVVASLYSALQAARTFRRMRAGTA 120
                         SCRHGDWMEFTRYQEYRYLLGVAVVASLYSALQAARTFRRMRAGTA
Sbjct: 61  AAALLALVAMALVASCRHGDWMEFTRYQEYRYLLGVAVVASLYSALQAARTFRRMRAGTA 120

Query: 121 YAATFLDFAGDQAVGYLLITASSAALPITIRMRSAVVNTFTDVVXXXXXXXXXXXXXXXX 180
           YAATFLDFAGDQAVGYLLITASSAALPITIRMRSAVVNTFTDVV                
Sbjct: 121 YAATFLDFAGDQAVGYLLITASSAALPITIRMRSAVVNTFTDVVAASISFAFLAFAALAF 180

Query: 181 XXXXXGFRLXXXXXXAYNY 199
                GFRL      AYNY
Sbjct: 181 SALIAGFRLSSSSSSAYNY 199



>Os03g0298300 Protein of unknown function DUF588 family protein
          Length = 206

 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/92 (60%), Positives = 62/92 (67%), Gaps = 4/92 (4%)

Query: 75  SCRHGDWMEFTRYQEYRYLLGVAVVASLYSALQAARTFRRMRAGTAYAAT----FLDFAG 130
           S +HGDWMEF RYQEYRYLL +A +A  YS  QA R   RMR G     T     LDFA 
Sbjct: 82  SNQHGDWMEFDRYQEYRYLLAIAALAFAYSLAQALRHALRMRRGVDPVPTASGRLLDFAS 141

Query: 131 DQAVGYLLITASSAALPITIRMRSAVVNTFTD 162
           DQ V YLL++A SAA PIT RMRSAV+N FTD
Sbjct: 142 DQVVAYLLMSALSAATPITNRMRSAVINRFTD 173



>Os05g0344400 Protein of unknown function DUF588 family protein
          Length = 204

 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 42/88 (47%), Positives = 55/88 (62%), Gaps = 3/88 (3%)

Query: 78  HGDWMEFTRYQEYRYLLGVAVVASLYSALQAARTFRRMRAGT---AYAATFLDFAGDQAV 134
           HGDW +F  Y+EYRY++ + V+A +Y+ LQ  R   R+  G       A  +DFAGDQ  
Sbjct: 84  HGDWRQFEHYEEYRYVVAIGVLAFIYTTLQLVRHGVRLTGGQDLQGKVAVLVDFAGDQVT 143

Query: 135 GYLLITASSAALPITIRMRSAVVNTFTD 162
            YLL++A SAA+PIT RMR    N FTD
Sbjct: 144 AYLLMSAVSAAIPITNRMREGADNVFTD 171



>Os03g0817100 Protein of unknown function DUF588 family protein
          Length = 156

 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 52/90 (57%), Gaps = 5/90 (5%)

Query: 78  HGDWMEFTRYQEYRYLLGVAVVASLYSALQAARTFRRMRAGTAY-----AATFLDFAGDQ 132
           HG   +F  Y EY Y LG++++A LY+  Q  R   R+  G        AA  +DFAGDQ
Sbjct: 34  HGGAQDFDNYPEYTYCLGISIIAVLYTTAQVTRDVHRLSWGRDVIAGRKAAAVVDFAGDQ 93

Query: 133 AVGYLLITASSAALPITIRMRSAVVNTFTD 162
            V YLL++A SAA P+T  MR A  N FTD
Sbjct: 94  VVAYLLMSALSAAAPVTDYMRQAADNLFTD 123



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.133    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,619,110
Number of extensions: 84712
Number of successful extensions: 226
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 4
Length of query: 199
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 103
Effective length of database: 12,023,257
Effective search space: 1238395471
Effective search space used: 1238395471
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 153 (63.5 bits)