Os03g0298300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF588 family protein.
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Os03g0298300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF588 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.26 | 0.343 | 11.5 | -0.766 | 0.924 | 0.862 | 0.821 | -5.29 | 0.18 | 1.08 | 26.69 | 5626 | -- | -- |
| 59.3 | 0.359 | 11.4 | 0.374 | 0.922 | 0.604 | 0.773 | -- | 0.318 | 1.39 | 15.17 | 6276 | -- | -- |
| 55.68 | 0.348 | 11.5 | -0.849 | 0.932 | 0.931 | -- | -5.93 | 0.22 | 1.13 | 27.69 | 5609 | -- | -- |
| 61.55 | 0.365 | 11.4 | 0.429 | 0.912 | 0.541 | -- | -- | 0.357 | 1.17 | 16.68 | 5690 | -- | -- |
| 106.42 | 0.48 | 11.5 | -0.927 | -- | 1.17 | -- | -6.6 | 0.303 | -- | 27.99 | 5458 | -- | -- |
| 64.88 | 0.378 | 11.4 | 0.752 | 0.932 | -- | 0.853 | -- | 0.489 | 1.12 | -- | -- | -- | -- |
| 67.86 | 0.386 | 11.4 | 0.721 | 0.932 | -- | -- | -- | 0.484 | 1.23 | -- | -- | -- | -- |
| 108.43 | 0.485 | 11.4 | 0.433 | -- | 0.737 | -- | -- | 0.338 | -- | 17.45 | 2471 | -- | -- |
| 63.12 | 0.37 | 11.4 | -- | 0.907 | 0.73 | -- | -- | 0.195 | 1.16 | 13.91 | 23474 | -- | -- |
| 121.58 | 0.515 | 11.3 | 0.757 | -- | -- | -- | -- | 0.503 | -- | -- | -- | -- | -- |
| 81.56 | 0.422 | 11.4 | -- | 0.944 | -- | -- | -- | 0.404 | 1.26 | -- | -- | -- | -- |
| 112.7 | 0.494 | 11.4 | -- | -- | 0.989 | -- | -- | 0.258 | -- | 13.29 | 2474 | -- | -- |
| 136.69 | 0.546 | 11.4 | -- | -- | -- | -- | -- | 0.419 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.55 | radiation | 30.0 | 30 | < th | dose independent | rect. | 4 | 16 |
| 2 | 53.61 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 7 | 54.01 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 4 | 16 |
| 9 | 54.08 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 10 | 54.14 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 4 | 16 |
| 13 | 54.22 | radiation | 20.0 | 30 | < th | dose independent | rect. | 6 | 14 |
| 20 | 54.39 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 1 | 10 |
| 21 | 54.39 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 2 | 11 |
| 24 | 54.46 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 1 | 10 |
| 26 | 54.47 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 29 | 54.52 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 3 | 7 |
| 58 | 54.68 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 66 | 54.72 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 1 | 8 |
| 82 | 54.80 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 16 |
| 84 | 54.80 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 131 | 54.95 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 4 | 4 |
| 136 | 54.96 | radiation | 40.0 | 90 | < th | dose dependent | sin | 1 | NA |
| 143 | 55.00 | temperature | 25.0 | 4320 | > th | dose independent | sin | 7 | NA |
| 151 | 55.01 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 7 | 9 |
| 190 | 55.13 | radiation | 20.0 | 270 | < th | dose independent | rect. | 2 | 11 |
| 192 | 55.13 | temperature | 25.0 | 4320 | > th | dose dependent | sin | 8 | NA |
| 205 | 55.17 | temperature | 25.0 | 4320 | < th | dose independent | sin | 7 | NA |
| 234 | 55.24 | radiation | 20.0 | 270 | < th | dose dependent | sin | 3 | NA |
| 242 | 55.25 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 18 | 16 |
| 297 | 55.34 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 327 | 55.41 | radiation | 20.0 | 270 | < th | dose independent | rect. | 2 | 8 |
| 338 | 55.43 | wind | 7.0 | 270 | < th | dose independent | rect. | 15 | 16 |
| 339 | 55.43 | radiation | 1.0 | 90 | > th | dose dependent | sin | 23 | NA |
| 342 | 55.44 | radiation | 20.0 | 90 | < th | dose independent | sin | 1 | NA |
| 357 | 55.46 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 361 | 55.46 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 2 | 4 |
| 384 | 55.51 | radiation | 10.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 426 | 55.57 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 4 | 10 |
| 439 | 55.58 | humidity | 70.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 445 | 55.58 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 4 | 5 |
| 449 | 55.59 | radiation | 20.0 | 90 | < th | dose independent | rect. | 16 | 23 |
| 454 | 55.60 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 17 | 16 |
| 478 | 55.61 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 534 | 55.67 | radiation | 20.0 | 10 | < th | dose independent | rect. | 4 | 10 |
| 568 | 55.71 | radiation | 20.0 | 90 | < th | dose independent | rect. | 1 | 23 |
| 656 | 55.80 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 659 | 55.80 | radiation | 20.0 | 10 | < th | dose independent | rect. | 4 | 8 |
| 692 | 55.82 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 707 | 55.83 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 718 | 55.84 | radiation | 20.0 | 90 | < th | dose independent | rect. | 11 | 23 |
| 753 | 55.87 | radiation | 20.0 | 43200 | < th | dose independent | sin | 11 | NA |
| 773 | 55.88 | radiation | 20.0 | 90 | < th | dose independent | rect. | 3 | 21 |
| 789 | 55.89 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 13 | NA |
| 811 | 55.91 | radiation | 20.0 | 10 | < th | dose independent | rect. | 4 | 6 |
| 826 | 55.92 | temperature | 25.0 | 4320 | > th | dose dependent | no | NA | NA |
| 828 | 55.92 | radiation | 10.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 845 | 55.92 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 6 | 23 |
| 846 | 55.92 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 21 | 23 |
| 847 | 55.92 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 23 | 23 |
| 868 | 55.93 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 3 | 23 |
| 874 | 55.93 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 918 | 55.95 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 949 | 55.95 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 15 | 16 |
| 965 | 55.96 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 981 | 55.97 | temperature | 25.0 | 10 | > th | dose independent | rect. | 4 | 5 |
| 994 | 55.97 | radiation | 40.0 | 270 | < th | dose independent | rect. | 15 | 16 |