BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0298300 Os03g0298300|AK061180
         (206 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G38480.1  | chr2:16110960-16111694 REVERSE LENGTH=189           83   1e-16

>AT2G38480.1 | chr2:16110960-16111694 REVERSE LENGTH=189
          Length = 188

 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 70/156 (44%), Gaps = 4/156 (2%)

Query: 51  RWRREDMLDKSPXXXXXXXXXXXXXXXXXXXSNQHGDWMEFDRYQEYRYXXXXXXXXXXX 110
           RW+RED++ K+                    SN+HG    F+ Y+EYRY           
Sbjct: 37  RWKREDLIKKASPITRGICLLFSLIAFLIMVSNKHGYGRNFNDYEEYRYVLAISIISTLY 96

Query: 111 XXXXXXRHALRMRRGVDPVPTASGRLLDFASDQVVAYLLMSALSAATPITNRMRSAVINR 170
                  H    R   D     +  L+DF+ DQ+VAYLL+SA S+A P+TN  R    N 
Sbjct: 97  TAWQTFAH-FSKREIFD---RRTSILVDFSGDQIVAYLLISAASSAIPLTNIFREGQDNI 152

Query: 171 FTDTTAAAISMXXXXXXXXXXXXXXXGYKLSKQTYM 206
           FTD+ A+AISM               GYKLS  +++
Sbjct: 153 FTDSAASAISMAIFAFIALALSALFSGYKLSTHSFI 188



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.131    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,829,342
Number of extensions: 42153
Number of successful extensions: 75
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 1
Length of query: 206
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 112
Effective length of database: 8,529,465
Effective search space: 955300080
Effective search space used: 955300080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 109 (46.6 bits)