FiT-DB / Search/ Help/ Sample detail

Os03g0817100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF588 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.49 (0.0358) R2 : 0.687
β1 : -0.38 (0.131) R2dD : 0.0138 R2D : 0.00496
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.99 (0.0686) R2dE : 0.628 R2E : 0.625
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 2.39 (0.278) R2dD*E : 0.042 R2D*E : 0.0364
γ1 : -0.261 (0.0764) R2dN8 : 0.0113 R2N8 : 0.00994
σ : 0.669
deviance : 206.39
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 14.84
memory length : 158
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 4.66
open length of G : 9.88

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
192.28 0.651 6.54 -0.607 0.561 -1.73 -2.89 0.0219 -0.341 0.107 17.84 205 4.17 9.42
191.9 0.645 6.54 -0.62 0.582 -1.7 -2.93 -- -0.344 24 17.9 197 4.29 9.43
200.84 0.66 6.52 -0.635 0.711 -1.57 -- 2.14 -0.331 23.7 17.5 186 4.55 9.36
227.86 0.703 6.54 -0.533 0.78 -1.49 -- -- -0.341 23.4 17.23 170 4.58 9.58
206.39 0.669 6.49 -0.38 -- -1.99 -- 2.39 -0.261 -- 14.84 158 4.66 9.88
231.66 0.714 6.59 -0.673 2.48 -- -2.56 -- -0.373 23.1 -- -- -- --
259.45 0.754 6.59 -0.567 2.49 -- -- -- -0.363 23 -- -- -- --
232 0.709 6.51 -0.59 -- -2.08 -- -- -0.29 -- 14.9 172 4.55 9.71
235.03 0.714 6.52 -- 0.787 -1.48 -- -- -0.27 23.3 17.43 166 4.59 9.65
646.36 1.19 6.52 -0.511 -- -- -- -- -0.345 -- -- -- -- --
267.94 0.766 6.57 -- 2.49 -- -- -- -0.3 23 -- -- -- --
240.3 0.722 6.51 -- -- -2.09 -- -- -0.267 -- 14.94 175 4.52 9.7
653.25 1.19 6.51 -- -- -- -- -- -0.288 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 195.28 temperature 10.0 90 > th dose dependent rect. 15 14
3 196.11 temperature 10.0 10 > th dose dependent rect. 15 15
9 198.44 temperature 15.0 270 > th dose independent rect. 4 9
13 199.82 temperature 10.0 270 > th dose dependent rect. 13 15
17 200.62 radiation 1.0 90 > th dose dependent rect. 15 15
20 200.68 temperature 20.0 90 > th dose dependent rect. 15 3
33 201.33 radiation 10.0 90 > th dose independent rect. 15 3
47 201.37 atmosphere 1015.0 1440 < th dose independent rect. 17 1
49 201.39 radiation 1.0 90 > th dose dependent rect. 15 4
78 201.88 wind 7.0 90 < th dose independent rect. 5 10
83 202.11 humidity 70.0 90 < th dose independent rect. 15 3
84 202.23 wind 3.0 90 > th dose independent rect. 15 2
89 202.40 humidity 90.0 90 < th dose dependent rect. 15 3
92 202.57 temperature 15.0 90 > th dose independent rect. 17 22
94 202.65 temperature 20.0 10 > th dose independent rect. 6 9
96 202.72 wind 7.0 90 < th dose independent rect. 17 22
101 202.90 atmosphere 1010.0 90 < th dose independent rect. 15 14
103 202.93 temperature 20.0 90 > th dose independent rect. 15 2
119 203.08 humidity 90.0 90 < th dose independent rect. 15 3
136 203.56 humidity 50.0 90 > th dose independent rect. 17 22
153 203.68 atmosphere 1010.0 10 < th dose independent rect. 15 15
154 203.72 temperature 15.0 10 > th dose dependent rect. 15 4
156 203.74 wind 7.0 10 < th dose independent rect. 6 9
158 203.77 temperature 10.0 90 > th dose dependent rect. 1 17
164 203.84 atmosphere 1015.0 270 < th dose independent rect. 13 15
166 203.90 atmosphere 995.0 90 > th dose independent rect. 5 10
170 203.95 wind 9.0 90 < th dose independent rect. 15 2
174 204.09 precipitation 0.1 90 < th dose independent rect. 15 2
175 204.09 precipitation 0.1 90 < th dose dependent rect. 15 2
177 204.13 wind 9.0 270 < th dose independent rect. 13 15
184 204.19 temperature 10.0 90 > th dose independent rect. 15 2
186 204.19 atmosphere 1010.0 90 < th dose independent rect. 15 2
189 204.22 radiation 40.0 90 < th dose independent rect. 15 2
200 204.42 wind 1.0 90 > th dose dependent rect. 15 2
201 204.43 wind 9.0 90 < th dose independent rect. 15 14
212 204.55 atmosphere 1015.0 270 < th dose independent rect. 4 9
213 204.55 temperature 10.0 270 > th dose independent rect. 13 15
221 204.72 precipitation 0.1 270 < th dose independent rect. 4 9
222 204.72 precipitation 0.1 270 < th dose dependent rect. 4 9
229 204.77 temperature 10.0 90 > th dose independent rect. 15 14
230 204.81 temperature 10.0 10 > th dose dependent rect. 2 17
233 204.86 atmosphere 995.0 90 > th dose independent rect. 17 22
238 204.96 radiation 40.0 90 < th dose independent rect. 15 14
241 205.00 precipitation 0.1 270 < th dose independent rect. 13 15
242 205.00 precipitation 0.1 270 < th dose dependent rect. 13 15
246 205.03 humidity 60.0 10 > th dose independent rect. 17 9
247 205.03 temperature 10.0 90 > th dose dependent rect. 5 10
290 205.21 humidity 90.0 10 < th dose dependent rect. 15 4
307 205.53 wind 7.0 10 < th dose independent rect. 19 20
322 205.65 precipitation 0.1 90 < th dose independent rect. 17 22
324 205.65 precipitation 0.1 90 < th dose dependent rect. 17 22
328 205.69 precipitation 0.1 270 < th dose independent rect. 24 17
329 205.69 precipitation 0.1 270 < th dose dependent rect. 24 17
331 205.75 temperature 10.0 10 > th dose dependent rect. 6 9
338 205.90 atmosphere 1015.0 270 < th dose independent rect. 24 17
341 205.92 radiation 20.0 270 > th dose dependent rect. 13 19
342 205.93 temperature 10.0 270 > th dose independent rect. 17 7
343 205.93 radiation 20.0 270 < th dose independent rect. 17 7
347 205.93 temperature 10.0 270 > th dose independent rect. 24 17
360 205.96 temperature 15.0 10 > th dose dependent rect. 24 19
362 205.99 radiation 20.0 270 > th dose dependent rect. 13 4
387 206.10 wind 9.0 270 < th dose independent rect. 24 17
393 206.16 wind 9.0 270 < th dose independent rect. 17 7
394 206.16 precipitation 0.1 90 < th dose independent rect. 15 14
395 206.16 radiation 40.0 270 < th dose dependent rect. 17 7
397 206.16 precipitation 0.1 90 < th dose dependent rect. 15 14
399 206.19 atmosphere 995.0 270 > th dose independent rect. 17 7
405 206.24 humidity 50.0 270 > th dose independent rect. 17 7
409 206.28 radiation 10.0 90 < th dose dependent rect. 17 9
410 206.33 humidity 50.0 270 > th dose independent rect. 4 9
411 206.35 humidity 90.0 10 < th dose independent rect. 15 4
412 206.35 temperature 30.0 270 < th dose dependent rect. 19 5
414 206.37 radiation 1.0 30 < th dose independent rect. 17 9
418 206.38 atmosphere 995.0 90 > th dose dependent rect. 15 2
426 206.44 temperature 20.0 270 > th dose independent rect. 13 4
433 206.49 radiation 1.0 270 > th dose dependent rect. 13 4
442 206.59 atmosphere 995.0 90 > th dose independent rect. 15 2
466 206.71 temperature 10.0 1440 > th dose independent rect. 16 2
471 206.71 temperature 10.0 1440 > th dose independent rect. 18 22
480 206.80 precipitation 0.1 270 < th dose independent rect. 17 7
482 206.80 precipitation 0.1 270 < th dose dependent rect. 17 7
498 206.82 wind 3.0 270 > th dose independent rect. 13 4
500 206.82 temperature 30.0 10 < th dose dependent rect. 20 6
550 206.97 humidity 90.0 270 < th dose independent rect. 13 4
554 206.98 wind 1.0 270 > th dose dependent rect. 13 4
565 207.05 radiation 10.0 90 < th dose dependent sin 14 NA
577 207.18 wind 9.0 10 < th dose independent rect. 15 15
605 207.27 wind 9.0 270 < th dose independent rect. 13 4
608 207.28 radiation 40.0 10 < th dose independent rect. 15 15
611 207.29 temperature 10.0 10 > th dose independent rect. 6 9
613 207.29 atmosphere 995.0 10 > th dose independent rect. 6 9
614 207.29 atmosphere 1015.0 10 < th dose independent rect. 6 9
615 207.29 wind 1.0 270 > th dose independent rect. 13 15
616 207.29 temperature 10.0 10 > th dose independent rect. 15 15
623 207.35 temperature 25.0 720 > th dose dependent rect. 20 12
630 207.40 temperature 20.0 10 > th dose independent rect. 15 4
633 207.41 precipitation 0.1 270 < th dose independent rect. 13 4
635 207.41 precipitation 0.1 270 < th dose dependent rect. 13 4
639 207.44 precipitation 0.1 10 < th dose independent rect. 6 9
640 207.44 precipitation 0.1 10 < th dose dependent rect. 6 9
651 207.50 temperature 10.0 270 > th dose independent rect. 13 4
653 207.50 atmosphere 1010.0 270 < th dose independent rect. 13 4
681 207.54 temperature 10.0 1440 > th dose independent rect. 6 10
684 207.54 temperature 10.0 1440 > th dose independent rect. 16 14
687 207.54 radiation 30.0 270 > th dose independent rect. 13 19
761 207.75 wind 1.0 270 > th dose independent rect. 4 9
771 207.82 wind 1.0 90 > th dose independent rect. 4 11
792 207.88 radiation 30.0 1440 < th dose independent rect. 17 1
851 208.05 wind 1.0 10 > th dose dependent rect. 15 4
854 208.09 humidity 90.0 90 < th dose independent rect. 6 9
895 208.15 atmosphere 995.0 270 > th dose independent rect. 24 17
931 208.27 atmosphere 1015.0 90 < th dose dependent rect. 15 2
932 208.28 radiation 1.0 90 > th dose independent rect. 18 21
936 208.30 temperature 30.0 10 < th dose independent rect. 17 9
951 208.41 precipitation 0.1 10 < th dose independent rect. 15 4
955 208.41 precipitation 0.1 10 < th dose dependent rect. 15 4
977 208.43 temperature 30.0 10 < th dose dependent rect. 17 9
993 208.48 radiation 1.0 90 > th dose independent rect. 6 9
999 208.50 wind 1.0 270 > th dose independent rect. 17 7