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Os05g0344400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF588 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.1 (0.0241) R2 : 0.555
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.53 (0.149) R2dC : 3.73 R2C : -2.96
β3 : 2.93 (0.128) R2dE : 3.51 R2E : -3.18
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0143 (0.0508) R2dN8 : 8.84e-05 R2N8 : -0.00675
σ : 0.451
deviance : 93.8
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_____
C
peak time of C : 12.1
E
wheather : radiation
threshold : 35.31
memory length : 244
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 15.1
open length of G : 15.4

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
92.66 0.452 11.1 -0.0875 3.55 2.96 -1.06 -0.526 0.0113 12.1 36.84 257 15 15.4
93.59 0.451 11.1 -0.0752 3.56 2.96 -0.484 -- 0.00905 12.1 89.66 247 15.1 15.3
93.92 0.451 11.1 -0.0833 3.55 2.94 -- 0.367 0.00294 12.1 73.5 245 15.1 15.3
93.56 0.451 11.1 -0.0892 3.53 2.93 -- -- 0.0141 12.1 35.3 244 15.1 15.4
161.33 0.592 11.2 0.0452 -- 1.01 -- 0.421 0.13 -- 114.8 1009 15.6 15.5
178.93 0.627 11.1 0.00899 0.71 -- -0.939 -- 0.112 8.16 -- -- -- --
181.62 0.631 11.1 -0.0181 0.711 -- -- -- 0.113 8.17 -- -- -- --
148.27 0.567 11.3 -0.32 -- 0.889 -- -- -0.0438 -- 62.32 1105 13.3 18
93.8 0.451 11.1 -- 3.53 2.93 -- -- 0.0143 12.1 35.31 244 15.1 15.4
209.45 0.676 11.2 -0.0125 -- -- -- -- 0.121 -- -- -- -- --
181.63 0.63 11.1 -- 0.711 -- -- -- 0.115 8.17 -- -- -- --
130.6 0.532 11.2 -- -- 1.26 -- -- 0.123 -- 173.5 1164 10.7 21
209.46 0.676 11.2 -- -- -- -- -- 0.122 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 94.95 radiation 40.0 270 < th dose independent rect. 15 15
2 94.98 wind 9.0 270 < th dose independent rect. 15 15
3 95.33 temperature 10.0 270 > th dose independent rect. 6 9
4 95.33 atmosphere 1015.0 270 < th dose independent rect. 6 9
5 95.33 temperature 10.0 270 > th dose independent rect. 15 15
6 95.40 precipitation 0.1 270 < th dose independent rect. 6 9
7 95.40 precipitation 0.1 270 < th dose dependent rect. 6 9
8 95.53 atmosphere 995.0 270 > th dose independent rect. 6 9
9 96.17 wind 9.0 270 < th dose independent rect. 6 9
10 96.96 precipitation 0.1 270 < th dose independent rect. 15 15
11 96.96 precipitation 0.1 270 < th dose dependent rect. 15 15
12 97.61 precipitation 0.1 270 < th dose independent rect. 2 17
13 97.61 precipitation 0.1 270 < th dose dependent rect. 2 17
14 98.08 precipitation 0.1 270 < th dose independent rect. 19 7
15 98.08 precipitation 0.1 270 < th dose dependent rect. 19 7
18 98.27 temperature 10.0 270 > th dose independent rect. 19 7
19 98.27 temperature 30.0 270 < th dose independent rect. 19 7
20 98.27 humidity 50.0 270 > th dose independent rect. 19 7
21 98.27 atmosphere 995.0 270 > th dose independent rect. 19 7
22 98.27 radiation 1.0 270 < th dose independent rect. 19 7
27 98.27 temperature 10.0 270 > th dose independent rect. 2 17
28 98.27 atmosphere 1015.0 270 < th dose independent rect. 2 17
29 98.27 radiation 1.0 270 < th dose dependent rect. 19 7
35 98.48 wind 9.0 270 < th dose independent rect. 19 7
36 98.49 wind 9.0 270 < th dose independent rect. 2 17
62 100.13 radiation 40.0 90 < th dose dependent rect. 4 16
94 100.86 humidity 50.0 270 > th dose independent rect. 9 16
104 101.60 radiation 40.0 10 < th dose dependent rect. 5 15
107 101.79 humidity 50.0 270 > th dose independent rect. 6 9
112 102.03 humidity 50.0 270 > th dose independent rect. 7 19
114 102.13 humidity 50.0 270 > th dose independent rect. 6 21
116 102.32 temperature 10.0 270 > th dose dependent rect. 19 7
120 102.57 temperature 10.0 270 > th dose dependent rect. 14 6
125 102.67 radiation 40.0 270 < th dose dependent rect. 1 8
127 102.96 radiation 20.0 90 < th dose independent rect. 4 16
141 103.64 radiation 20.0 270 < th dose independent rect. 1 8
171 104.99 atmosphere 995.0 270 > th dose independent rect. 15 15
191 105.03 radiation 1.0 270 < th dose dependent rect. 9 17
213 105.46 radiation 1.0 270 > th dose independent rect. 6 9
230 105.78 atmosphere 995.0 270 > th dose independent rect. 2 17
267 105.99 radiation 10.0 10 < th dose independent rect. 5 16
270 106.08 radiation 1.0 270 > th dose independent rect. 15 15
286 106.27 wind 1.0 270 > th dose independent rect. 6 9
290 106.34 atmosphere 1015.0 270 < th dose independent rect. 19 7
299 106.55 atmosphere 995.0 90 > th dose independent rect. 4 16
314 107.10 temperature 30.0 270 < th dose independent rect. 1 8
319 107.28 temperature 10.0 90 > th dose dependent rect. 4 16
320 107.29 wind 7.0 270 < th dose independent rect. 1 8
323 107.44 temperature 10.0 270 > th dose independent rect. 1 8
325 107.44 humidity 50.0 270 > th dose independent rect. 1 8
326 107.44 atmosphere 995.0 270 > th dose independent rect. 1 8
327 107.44 atmosphere 1015.0 270 < th dose independent rect. 1 8
328 107.44 temperature 10.0 270 > th dose independent rect. 9 16
330 107.46 precipitation 0.1 270 < th dose independent rect. 1 8
332 107.46 precipitation 0.1 270 < th dose dependent rect. 1 8
337 107.62 wind 1.0 270 > th dose independent rect. 19 7
357 108.08 radiation 1.0 270 < th dose independent rect. 9 17
368 108.45 radiation 1.0 270 < th dose independent rect. 13 13
376 108.58 wind 9.0 270 < th dose independent rect. 9 16
381 108.75 wind 1.0 270 > th dose independent rect. 14 6
382 108.77 precipitation 0.1 270 < th dose independent rect. 14 6
383 108.77 precipitation 0.1 270 < th dose dependent rect. 14 6
385 108.88 wind 9.0 270 < th dose independent rect. 14 6
389 108.95 temperature 10.0 270 > th dose independent rect. 14 6
390 108.95 atmosphere 1015.0 270 < th dose independent rect. 14 6
391 108.95 temperature 10.0 270 > th dose independent rect. 20 18
392 108.95 atmosphere 995.0 270 > th dose independent rect. 20 18
397 109.10 humidity 50.0 90 > th dose dependent rect. 20 8
398 109.13 wind 9.0 270 < th dose independent rect. 20 18
401 109.18 radiation 1.0 10 < th dose dependent rect. 20 9
404 109.34 radiation 40.0 90 < th dose dependent rect. 16 17
406 109.35 precipitation 0.1 270 < th dose independent rect. 20 18
408 109.35 precipitation 0.1 270 < th dose dependent rect. 20 18
444 109.83 precipitation 0.1 270 < th dose independent rect. 9 16
445 109.83 precipitation 0.1 270 < th dose dependent rect. 9 16
485 110.34 precipitation 0.1 10 < th dose independent rect. 5 15
486 110.34 precipitation 0.1 10 < th dose dependent rect. 5 15
487 110.36 wind 9.0 10 < th dose independent rect. 20 9
491 110.40 temperature 10.0 10 > th dose independent rect. 20 9
492 110.40 temperature 30.0 10 < th dose independent rect. 20 9
493 110.40 humidity 50.0 10 > th dose independent rect. 20 9
496 110.40 atmosphere 995.0 10 > th dose independent rect. 20 9
497 110.40 radiation 1.0 10 < th dose independent rect. 20 9
502 110.40 temperature 10.0 10 > th dose independent rect. 5 15
504 110.40 atmosphere 1015.0 10 < th dose independent rect. 5 15
508 110.49 wind 9.0 90 < th dose dependent rect. 20 8
520 110.74 humidity 50.0 270 > th dose dependent rect. 1 8
528 110.87 wind 9.0 10 < th dose independent rect. 5 15
530 110.89 temperature 10.0 270 > th dose dependent rect. 2 17
540 111.05 precipitation 0.1 10 < th dose independent rect. 20 9
541 111.05 precipitation 0.1 10 < th dose dependent rect. 20 9
545 111.11 temperature 10.0 1440 > th dose independent rect. 21 8
548 111.11 temperature 30.0 1440 < th dose independent rect. 21 8
552 111.11 humidity 50.0 1440 > th dose independent rect. 21 8
558 111.11 atmosphere 995.0 1440 > th dose independent rect. 21 8
559 111.11 radiation 20.0 1440 < th dose independent rect. 21 8
571 111.11 temperature 10.0 1440 > th dose independent rect. 5 16
587 111.37 humidity 50.0 270 > th dose independent rect. 20 18
608 111.46 radiation 40.0 270 < th dose independent rect. 14 5
691 111.82 precipitation 0.1 270 < th dose independent rect. 2 5
697 111.82 precipitation 0.1 270 < th dose dependent rect. 2 5
706 111.91 wind 7.0 270 < th dose independent rect. 2 5
711 111.94 radiation 1.0 270 < th dose dependent sin 14 NA
732 112.17 humidity 70.0 270 > th dose independent rect. 2 5
735 112.18 temperature 10.0 270 > th dose independent rect. 2 5
737 112.18 temperature 30.0 270 < th dose independent rect. 2 5
738 112.18 humidity 50.0 270 > th dose independent rect. 2 5
740 112.18 atmosphere 995.0 270 > th dose independent rect. 2 5
741 112.18 atmosphere 1015.0 270 < th dose independent rect. 2 5
744 112.18 temperature 10.0 270 > th dose independent rect. 7 19
755 112.27 radiation 1.0 10 < th dose dependent rect. 20 18
885 112.87 wind 9.0 90 < th dose dependent rect. 4 16
904 113.07 precipitation 0.1 270 < th dose independent rect. 7 19
905 113.07 precipitation 0.1 270 < th dose dependent rect. 7 19
913 113.17 wind 9.0 270 < th dose independent rect. 7 19
914 113.18 wind 9.0 270 < th dose dependent rect. 2 5
961 113.39 atmosphere 995.0 270 > th dose independent rect. 9 16