BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0344400 Os05g0344400|Os05g0344400
(204 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G38480.1 | chr2:16110960-16111694 REVERSE LENGTH=189 132 1e-31
AT2G36330.1 | chr2:15233620-15235298 FORWARD LENGTH=284 69 1e-12
AT5G62820.1 | chr5:25223828-25224898 REVERSE LENGTH=298 55 4e-08
>AT2G38480.1 | chr2:16110960-16111694 REVERSE LENGTH=189
Length = 188
Score = 132 bits (331), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 93/156 (59%), Gaps = 3/156 (1%)
Query: 49 RRWRRQDLLEKSGSALRVAAWAFSLLAFVVMGANDHGDWRQFEHYEEYRYVVAIGVLAFI 108
+RW+R+DL++K+ R FSL+AF++M +N HG R F YEEYRYV+AI +++ +
Sbjct: 36 QRWKREDLIKKASPITRGICLLFSLIAFLIMVSNKHGYGRNFNDYEEYRYVLAISIISTL 95
Query: 109 YTTLQLVRHGVRLTGGQDLQGKVAVLVDFAGDQVTAYLLMSAVSAAIPITNRMREGADNV 168
YT Q H + + + ++LVDF+GDQ+ AYLL+SA S+AIP+TN REG DN+
Sbjct: 96 YTAWQTFAH---FSKREIFDRRTSILVDFSGDQIVAYLLISAASSAIPLTNIFREGQDNI 152
Query: 169 FTDXXXXXXXXXXXXXXXXXXXXXVSGFKLAKQTYI 204
FTD SG+KL+ ++I
Sbjct: 153 FTDSAASAISMAIFAFIALALSALFSGYKLSTHSFI 188
>AT2G36330.1 | chr2:15233620-15235298 FORWARD LENGTH=284
Length = 283
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 64/110 (58%), Gaps = 3/110 (2%)
Query: 49 RRWRRQDLLEKSGSALRVAAWAFSLLAFVVMGANDHGDWR--QFEHYEEYRYVVAIGVLA 106
RR RR+++++ S R++ +L++F +M A+ W F+ Y+EYR+ +++ V+A
Sbjct: 124 RRSRREEVVKFSALGFRLSEVVLALISFSIMAADKTKGWSGDSFDRYKEYRFCLSVNVVA 183
Query: 107 FIYTTLQLVRHGVRLTGGQDL-QGKVAVLVDFAGDQVTAYLLMSAVSAAI 155
F+Y++ Q L + L + L +F DQV AYLLMSA +AA+
Sbjct: 184 FVYSSFQACDLAYHLVKEKHLISHHLRPLFEFIIDQVLAYLLMSASTAAV 233
>AT5G62820.1 | chr5:25223828-25224898 REVERSE LENGTH=298
Length = 297
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Query: 50 RWRRQDLLEKSGSALRVAAWAFSLLAFVVMGANDHGDWR--QFEHYEEYRYVVAIGVLAF 107
R R DL+ + R+ +++F +M A+ W ++ Y+EYRY +A+ V+AF
Sbjct: 139 RARGDDLVSLTALGFRITEVILCVISFSIMAADKTQGWSGDSYDRYKEYRYCLAVNVIAF 198
Query: 108 IYTTLQLVRHGVRLTGGQDL-QGKVAVLVDFAGDQVTAYLLMSAVSAA 154
+Y+ + + + L F+ DQ+ AYLLMSA S A
Sbjct: 199 VYSAFEACDAACYIAKESYMINCGFHDLFVFSMDQLLAYLLMSASSCA 246
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.137 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,614,527
Number of extensions: 87647
Number of successful extensions: 231
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 3
Length of query: 204
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 110
Effective length of database: 8,529,465
Effective search space: 938241150
Effective search space used: 938241150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 109 (46.6 bits)